RNA id: TU237668


Basic Information

Item Value
RNA id TU237668
length 572
lncRNA type read_through
GC content 0.40
exon number 2
gene id LOC118943869
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97636136 ~ 97691714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaaaatacagaggtagccattactccaatctgtcctactgaaaaacgaattgtcccggtggatatattatcgaatagatatttgaaaaacaccttgaggattgattataaacaacgttttccatgtttctgtcgatattatggagctaatttgtaatatttttcggcgttttcaGTGACCGCAATtgccgggcgatttctcagccaaacatgaagaaaaaacggagctatttctcctacaaaaataatctttttggaaaaaaggaacattttctatctaactgggagtctccttagtgaaaacatccgaagctcatcaaagCTCCCTCTCGGCCTCTCTGATGCTGACGCAAGCGTGGTCCCGGTGCGACCCGATCACGGTACACacggtacagacacacacactacactgacggCAGTAGATTCGGTTCATCTCCTGGTGTTCCGGGCACCTGATGACCATGTAAGTTATACTTCAGCTTGCTGCCAGTTGTTTAATGATTTGTCAtataataaattaaataaaacaatcgTCAACTTTAAATGAAACGTTGAAACACAAAGTATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237673 lncRNA downstream 18112 97617666 ~ 97618024 (-) True G209858
TU237711 lncRNA downstream 24033 97609516 ~ 97612103 (-) True G209875
TU237730 lncRNA downstream 31759 97604157 ~ 97604377 (-) True G209883
TU237728 lncRNA downstream 36539 97599359 ~ 97599597 (-) True G209881
TU237708 lncRNA downstream 37003 97595728 ~ 97599133 (-) True G209874
TU237648 lncRNA upstream 7591 97699305 ~ 97723186 (-) False LOC118943868
TU237660 lncRNA upstream 18090 97709804 ~ 97746811 (-) True G209845
TU237744 lncRNA upstream 22477 97714191 ~ 97750984 (-) True G209893
TU237651 lncRNA upstream 24234 97715948 ~ 97723186 (-) False LOC118943868
TU237649 lncRNA upstream 30706 97722420 ~ 97723186 (-) True LOC118943868
LOC118944213 mRNA downstream 10239 97625781 ~ 97625897 (-) True LOC118944213
LOC118944190 mRNA downstream 13952 97622006 ~ 97622184 (-) False LOC118944190
XM_036934797.1 mRNA downstream 139638 97494344 ~ 97496498 (-) True LOC118937309
XM_036960153.1 mRNA downstream 248183 97089207 ~ 97387953 (-) False LOC110502515
XM_036960127.1 mRNA downstream 558236 97028186 ~ 97077900 (-) True pik3c2g
LOC118944207 mRNA upstream 26026 97717740 ~ 97717837 (-) True LOC118944207
LOC118944209 mRNA upstream 27960 97719674 ~ 97719773 (-) True LOC118944209
XR_005039176.1 mRNA upstream 30278 97721992 ~ 97723183 (-) False LOC118943868
LOC118944208 mRNA upstream 63916 97755630 ~ 97755727 (-) True LOC118944208
LOC118944211 mRNA upstream 65850 97757564 ~ 97757663 (-) True LOC118944211
TU237655 other downstream 16924 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 133742 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 218948 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1213912 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1501664 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 452606 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1226734 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1250760 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1334018 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1431519 99123233 ~ 99123658 (-) True G211127

Expression Profile