RNA id: XR_005039176.1



Basic Information


Item Value
RNA id XR_005039176.1
length 799
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118943868
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97699305 ~ 97723186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggtaaaatacagaggtagccattactccaatctgtcctactgaaaaacgaattgtcccggtggatatattatcgaatagatatttgaaaaacatcttgaggattgattataaacaacgtttgccatgtttctgtcgatattatggagctaatttgtaATATTTTTCGGTGTTTTCAGTGACCGCAATtgccgggcgatttctcagccaaacgtgaagaaaaaacggagctatttcgcctacaaaaataatatttttggaaaaaaggaacattttctATCTAACTGGGAGTTTCCTTAGTggaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagcccctatTCCATCTCCCTATTCCAAAAATCCCTTTAATATACGGTCTACATTTTGAAAATCCATTTACTGTTTTGCAACAGCTCTGTGTCTTATGGACTCTGTTCTAAAAACTCGACAACCTTGTTCCAAGAAAAATGCTTGTAGACGATTGAGAAACTGTAATAGGTTGTTTCCGGATTTAAATAGTACAAGATTACAGTACCATGAGGGACAAAAATGCtgacagcacctggtattcccaggcagtctcccatccaaggactAACCAGGCCTGACCTTGCTTAGCTTCCGAGACCGGgcgtattgtattgtaatgtgtatatgatgCACGTAAAcacttcactgtaccgtttacaccctgtatcctgtgcatgtgacgaATAAACGTTGATGTGATGATCAACTCACCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237668 lncRNA downstream 30278 97636136 ~ 97691714 (-) True LOC118943869
TU237679 lncRNA downstream 31571 97626323 ~ 97690421 (-) True LOC118943865
TU237675 lncRNA downstream 32887 97652692 ~ 97689105 (-) True G209860
TU237642 lncRNA downstream 38236 97647549 ~ 97683756 (-) False G209834
TU237643 lncRNA downstream 38236 97655156 ~ 97683756 (-) True G209834
TU237659 lncRNA upstream 3756 97726939 ~ 97771450 (-) True G209844
TU237657 lncRNA upstream 36706 97759889 ~ 97761086 (-) True LOC118943870
TU237666 lncRNA upstream 41106 97764289 ~ 97769193 (-) True G209851
TU237652 lncRNA upstream 55913 97779096 ~ 97780558 (-) True G209838
TU237752 lncRNA upstream 58874 97782057 ~ 97782475 (-) True G209901
LOC118944209 mRNA downstream 2219 97719674 ~ 97719773 (-) True LOC118944209
LOC118944207 mRNA downstream 4155 97717740 ~ 97717837 (-) True LOC118944207
XR_005039177.1 mRNA downstream 30549 97690525 ~ 97691443 (-) False LOC118943869
XM_036960269.1 mRNA downstream 32160 97652206 ~ 97689832 (-) False LOC118943865
LOC118944208 mRNA upstream 32447 97755630 ~ 97755727 (-) True LOC118944208
LOC118944211 mRNA upstream 34381 97757564 ~ 97757663 (-) True LOC118944211
XR_005039179.1 mRNA upstream 36699 97759882 ~ 97760800 (-) False LOC118943870
XM_036934496.1 mRNA upstream 404765 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 589840 98313023 ~ 98352485 (-) True LOC110500713
TU237655 other downstream 102780 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 219598 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 304804 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1299768 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1587520 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 421137 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1195265 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1219291 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1302549 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1400050 99123233 ~ 99123658 (-) True G211127

Expression Profile