RNA id: XR_005039179.1


Basic Information

Item Value
RNA id XR_005039179.1
length 527
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC118943870
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 97759882 ~ 97761086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttctatctaactgggagtctccttagtgaaaacatccgaagctcatcaaagGGGGTGCACCGTTcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagcccctatTCCATCTCCCTATTCCAAAAATCCCTTTAATATACGGTCTACATTTTGAAAATCCATTTACTGTTTTGCAACAGCTCTGTGTCTTATGGACTCTGTTCTAAAAACTCGACAACCTTGTTCCAAGAAAAATGCTTGTAGACGATTGAGAAACTGTAATAGGTTGTTTCCGGATTTAAATAGTACAAGATTACAGTACCATGAGGGACAAAAATGCtgacagcacctggtattcccaggcagtctcccatccaaggactAACCAGGCCTGACCTTGCTTAGCTTCCGAGACCGGgcgtattgtattgtaatgtgtatatgatgCACGTAAAcacttcactgtaccgtttacaccctgtatcctgtgcatgtgacgaATAAACGTTGATGTGATGATCAACTCACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237744 lncRNA downstream 8898 97714191 ~ 97750984 (-) True G209893
TU237660 lncRNA downstream 13071 97709804 ~ 97746811 (-) True G209845
TU237648 lncRNA downstream 36696 97699305 ~ 97723186 (-) False LOC118943868
TU237651 lncRNA downstream 36696 97715948 ~ 97723186 (-) False LOC118943868
TU237649 lncRNA downstream 36696 97722420 ~ 97723186 (-) True LOC118943868
TU237666 lncRNA upstream 3489 97764289 ~ 97769193 (-) True G209851
TU237652 lncRNA upstream 18296 97779096 ~ 97780558 (-) True G209838
TU237752 lncRNA upstream 21257 97782057 ~ 97782475 (-) True G209901
TU237753 lncRNA upstream 21901 97782701 ~ 97782951 (-) True G209902
TU237760 lncRNA upstream 30373 97791173 ~ 97791393 (-) True G209907
LOC118944211 mRNA downstream 2219 97757564 ~ 97757663 (-) True LOC118944211
LOC118944208 mRNA downstream 4155 97755630 ~ 97755727 (-) True LOC118944208
XR_005039176.1 mRNA downstream 36699 97721992 ~ 97723183 (-) False LOC118943868
LOC118944209 mRNA downstream 40109 97719674 ~ 97719773 (-) True LOC118944209
LOC118944207 mRNA downstream 42045 97717740 ~ 97717837 (-) True LOC118944207
XM_036934496.1 mRNA upstream 367148 98127948 ~ 98145011 (-) False LOC118936884
XM_021578235.2 mRNA upstream 552223 98313023 ~ 98352485 (-) True LOC110500713
XM_021617578.2 mRNA upstream 663215 98424015 ~ 98426658 (-) False lmo2
NM_001160508.1 mRNA upstream 663540 98424340 ~ 98426375 (-) True lmo2
XM_036960381.1 mRNA upstream 713934 98474734 ~ 98513861 (-) True LOC110500720
TU237655 other downstream 140670 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 257488 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 342694 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 1337658 96421866 ~ 96422224 (-) True G208658
TU236021 other downstream 1625410 96134077 ~ 96134472 (-) True G208472
TU238041 other upstream 383520 98144320 ~ 98145517 (-) True LOC118936884
TU238753 other upstream 1157648 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 1181674 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 1264932 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 1362433 99123233 ~ 99123658 (-) True G211127