RNA id: XM_021578108.2


Basic Information

Item Value
RNA id XM_021578108.2
length 2001
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110500630
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98803005 ~ 98808340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTGGTAGGGAATATGGTGCGATTTGCCACTGGTCACACAGAGATTGTGTAACCTCCAGACTCCCCAAGTCGTTTTGCGTTTAACAAGGCACTGTTGTAGTAGTGAGGAGGAACCTAACTTACCTTTATGTCACATGTCTGATACCAACAATCAGAGGACACAACCCTACTGGACTGCCTTTCAGTGAGATGTGAATGAATTTTAAGTAGTTGTCTGGGCAGTTGGACAAACTAACACTGATTTGGATTTTAAAGCTGCTTGTGGACTTGGCTGGCTTTGGTTTCACTATGGACAGAAGGATGTATCAACCAACCCTTATCTCATTGGTCGTATTGCTCTTCACCCTGTCCAATATTGTCTACGGGGGTAAAATATTAATCTACCCAATGGATGGAAGCCACTGGGTCAACATGAGAGTCATCATCGAAGAGTTGCATTCCAAAGGCCATGACATCACAGTGGTGCGAGCGTCAAACAGCTGGTACATCAAGGAGAATTCCCCCCACTACACCACCATTACCATCCCCAACACTGGTGGCTTCGATGAAAACTTCTTTGGTGAATTTATATTAAGTAAACATCTGAAGATTCAAAGGGAGCAGGGGAAAAGTTTTTGGACCGAACTCAAGCTTCAGTCATCAATGAAGGAGACTTTTTTCGAGTTCCACAAGAACATGGCTGAAATGATCACTCGTGTCCTTGAAGACAGAAAGTTGATCCAGTCTCTCCAGGATGCTAAGTTTGATTTGGTTCTGACAGATCCTGGGATTGGTGGAGGGACGATCTTAGCCCGTGTCCTCCACCTTCCTCTGGTTTACAATGTCAGATGGACCATTCAAGGTGAAGCTCATTTGGTCATCGCCCCGTCGCCTCTCTCTTACGTCCCATACACACCCACAGAGTTGACAGACAAGATGACCTTCCTCCAGAGAGTCACCAACGTCTTAGCTTACATACTCGGGAGTTACACATTGGCATCTATCACAGAACCCAACTACAAACCGATAGTCCAGCGTTACTTTGGCCCTGACGTCGATTATAACGCATTCTTCCAGGAAGCAGATATCTGGCTCATGAGAAGCGATTTTGTCTTTGAATTTCCGAAACCCACCATGCCGAATATGGTCTACATTGGTGGGTTCCAGTGTAAGCCCTCCAAGCCTCTTCCACAGGACCTGGAGGAGTTTGTTCAGAGTTCCAGCGAGCATGGGGTTGTCATGATGACTCTGGGGACTTTGGTGGCAGAGCTTCCTGAAGATATCGCAGATGAAATCGCTGCCGCGTTCGCTCAGCTGCCTCAGAAGGTCATCTGgagGTATACCGGACAGAGACCCTCTACCCTGGGTAACAACACCCTACTGGTGGACTGGCTTCCCCAGAACAACCTCCTAGGACACCCCAAGACTCGGGCCTTCGTTGCCCATGGAGGAACCAACGGTGTCCAGGAGGCCATCTACCACGGCGTCCCGGTAGTCGGCCTCCCTCTCGCCTTCGACCAGTCCGACAACCTCTCCAAGTTGAAGGAGAGGGGGGCAGCTAACACGGTGGATATCGTCACAATGGACAGAAATGTGTTTCTGGAGGCTTTGAAGGCTGTGCTGCATGAACCGTCCTACAGGGAGAACATGCAGAGGTTGTCCAGACTGCACAGAGACCAACCCATTAAACCACTGGACAAGGCAGTGTTCTGGATCGAGTTTGTTATGAGACATAAAGGAGCTCGTCACCTGAGGACAGAGTCCTATAAGATGTCCTGGATAGTATACCACTCGGTTGATGTGATAGCGACTTTGCTGATGTGTGGGTTGCTTGTAACGCTGGTTTGCCTGGCAGGCGTAAGATGTGTTTGGCGTAAGGTGTTTTGCAGGAACAAAGTGAAAAGTGAATGATAATGTGTTTTGAGATGTGAATATTAAAATATTATCTTATCATTGCTCAATCAGCAATTTATcaataacatttacatttgatcAATAAAACATTGTTTTAGGGTATGTGA

Function

GO: NA

KEGG:

id description
K00699 UGT; glucuronosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238810 lncRNA downstream 15974 98786626 ~ 98787031 (-) True G210707
TU238809 lncRNA downstream 16545 98785611 ~ 98786460 (-) True G210706
TU238754 lncRNA downstream 17442 98784328 ~ 98785563 (-) True G210665
TU238791 lncRNA downstream 35310 98765404 ~ 98767695 (-) True G210693
TU238798 lncRNA downstream 53729 98747254 ~ 98749276 (-) True G210695
TU238813 lncRNA upstream 1459 98809799 ~ 98810003 (-) True G210710
TU238745 lncRNA upstream 27331 98835671 ~ 98841916 (-) True G210656
TU238832 lncRNA upstream 101596 98909936 ~ 98910293 (-) True G210728
TU238834 lncRNA upstream 124616 98932956 ~ 98955541 (-) False G210730
TU238835 lncRNA upstream 124616 98932956 ~ 98933448 (-) True G210730
XM_036960440.1 mRNA downstream 5217 98795849 ~ 98797788 (-) False LOC110500636
XM_036960449.1 mRNA downstream 79903 98692756 ~ 98723102 (-) False LOC110500839
XM_036960450.1 mRNA downstream 79903 98692756 ~ 98723102 (-) True LOC110500839
XM_021580609.2 mRNA downstream 113869 98642990 ~ 98689136 (-) True LOC110502529
XM_036960425.1 mRNA downstream 201755 98587916 ~ 98601250 (-) False LOC110500748
XM_036960454.1 mRNA upstream 11441 98819781 ~ 98832865 (-) False LOC110502520
XM_036960480.1 mRNA upstream 11441 98819781 ~ 98832865 (-) False LOC110502520
XM_036960486.1 mRNA upstream 11441 98819781 ~ 98832865 (-) False LOC110502520
XM_036960495.1 mRNA upstream 11441 98819781 ~ 98832865 (-) False LOC110502520
XM_036960497.1 mRNA upstream 11441 98819781 ~ 98832865 (-) False LOC110502520
TU238041 other downstream 657488 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1183793 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1300611 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1385817 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2380781 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 110108 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 134134 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 217392 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 314893 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 807336 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile