RNA id: TU238754


Basic Information

Item Value
RNA id TU238754
length 880
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G210665
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98784328 ~ 98785563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacatactacctcaatcagcctgactaaccggtgtctgtatgtagcctctctactgtatatagcctcgctactgtatatagcctctctactgtatatagcctctctactgtatatagcctcgctactgttatagcctcgctactgtatataacctctctactgtatatagcctctctactgtatatagcctctctactgtgtatagcctctctactgtctatatcctcactactgtatatagcctctctactgtatatagcctctctactgtgtatagcctctctactgtctatatcctcactactgtatatatcctcactactgtatatagcctctctactgtatataacctctctactgtatatagcctcgctactgtatatagcctctctactgttatagcctctctactgtatatagcctctattgtatatagcctctctactgtatataacctctgtactgtatatagcctctctactgtatatagcctcactactgtatatagcctctctactgttatagcctctctactgtatatagcctctctactgtataaagcctctctactgtatatagcctctctactgtatatagcctctctactgtataaagcctctctactgtatatagcctctctactgtatatagcctctctactgtatatagcctcactactgtatatagcctctctactgttatagcctctctactgtatatagcctctctactgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238791 lncRNA downstream 16633 98765404 ~ 98767695 (-) True G210693
TU238796 lncRNA downstream 29526 98745067 ~ 98754802 (-) True G210694
TU238797 lncRNA downstream 35052 98742478 ~ 98749276 (-) False G210695
TU238798 lncRNA downstream 35052 98747254 ~ 98749276 (-) True G210695
TU238774 lncRNA downstream 71771 98711146 ~ 98712557 (-) False G210683
TU238809 lncRNA upstream 48 98785611 ~ 98786460 (-) True G210706
TU238810 lncRNA upstream 1063 98786626 ~ 98787031 (-) True G210707
TU238813 lncRNA upstream 24236 98809799 ~ 98810003 (-) True G210710
TU238745 lncRNA upstream 50108 98835671 ~ 98841916 (-) True G210656
TU238832 lncRNA upstream 124373 98909936 ~ 98910293 (-) True G210728
XM_036960449.1 mRNA downstream 61226 98692756 ~ 98723102 (-) False LOC110500839
XM_036960450.1 mRNA downstream 61226 98692756 ~ 98723102 (-) True LOC110500839
XM_021580609.2 mRNA downstream 95192 98642990 ~ 98689136 (-) True LOC110502529
XM_036960425.1 mRNA downstream 183078 98587916 ~ 98601250 (-) False LOC110500748
XM_036960421.1 mRNA downstream 248638 98521998 ~ 98535690 (-) True edc3
XM_036960440.1 mRNA upstream 10286 98795849 ~ 98797788 (-) False LOC110500636
XM_021578120.2 mRNA upstream 10396 98795959 ~ 98808194 (-) True LOC110500636
XM_021578108.2 mRNA upstream 17442 98803005 ~ 98808340 (-) True LOC110500630
XM_036960454.1 mRNA upstream 34218 98819781 ~ 98832865 (-) False LOC110502520
XM_036960480.1 mRNA upstream 34218 98819781 ~ 98832865 (-) False LOC110502520
TU238041 other downstream 638811 98144320 ~ 98145517 (-) True LOC118936884
TU237655 other downstream 1165116 97618859 ~ 97619212 (-) True G209841
TU237607 other downstream 1281934 97501172 ~ 97502394 (-) True G209802
TU237272 other downstream 1367140 97416821 ~ 97417188 (-) True G209560
TU236221 other downstream 2362104 96421866 ~ 96422224 (-) True G208658
TU238753 other upstream 132885 98918448 ~ 98946069 (-) True LOC118943885
TU238756 other upstream 156911 98942474 ~ 98943797 (-) True LOC118943882
TU238870 other upstream 240169 99025732 ~ 99026118 (-) True G210765
TU239331 other upstream 337670 99123233 ~ 99123658 (-) True G211127
TU239562 other upstream 830113 99615676 ~ 99615914 (-) True LOC118936886

Expression Profile