RNA id: TU122100


Basic Information

Item Value
RNA id TU122100
length 262
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G107580
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4305312 ~ 4305573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAAAAGTGGTTTTCGGGAAAGAAACATGTTTATATTCGGCTGCCATTTGGAATGATTTTCCAAAGAATTTGAAACCTTATAACCTCAATAGGTAGTTTCAAGATCTCACTGAGCAAAATGGCTAAATAGTAGCATGTCTCAAAAGTGAATGTTGAGATTAAAGTAGGTGACAGAGAGGGAAATGCTGGGATAGCATGTGGTCTGCCTTTTTGGTGCCTGTTGCTTATTATATTGTGATTGTCTtgtgtgagatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120908 lncRNA upstream 3321 4299818 ~ 4301991 (+) False deptor
TU120903 lncRNA upstream 3321 4300835 ~ 4301991 (+) True deptor
TU120905 lncRNA upstream 5069 4297887 ~ 4300243 (+) False deptor
TU120907 lncRNA upstream 5069 4297887 ~ 4300243 (+) False deptor
TU120909 lncRNA upstream 5069 4297887 ~ 4300243 (+) False deptor
TU122101 lncRNA downstream 136 4305709 ~ 4305999 (+) True G107581
TU122102 lncRNA downstream 615 4306188 ~ 4306575 (+) True G107582
TU122157 lncRNA downstream 43294 4348867 ~ 4349162 (+) True G107611
TU122158 lncRNA downstream 47668 4353241 ~ 4353525 (+) True G107612
TU122159 lncRNA downstream 48011 4353584 ~ 4353832 (+) True G107613
XM_036935488.1 mRNA upstream 2776 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 2776 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 2776 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 2776 4237055 ~ 4302536 (+) False deptor
XM_036935442.1 mRNA upstream 185570 4113122 ~ 4119742 (+) True LOC110507036
XM_036935521.1 mRNA downstream 22410 4327983 ~ 4538057 (+) False col14a1a
XM_036935515.1 mRNA downstream 22413 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA downstream 22414 4327987 ~ 4569652 (+) False col14a1a
XM_036935508.1 mRNA downstream 22417 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA downstream 22417 4327990 ~ 4572381 (+) True col14a1a
TU120937 other upstream 166816 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 166816 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 277718 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 504960 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 438595 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 503166 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 552338 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 830783 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 990606 5296179 ~ 5299933 (+) True G108354

Expression Profile