RNA id: TU122101


Basic Information

Item Value
RNA id TU122101
length 291
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G107581
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4305709 ~ 4305999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatggcacaacacaagaagatactggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatatcaatataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccaccatgaaaaagccaggctacggtttgcaactgcacatggggacaaagatcgtactttttggagagatgccctctggtcagatgaaacaaaaatagaactgtttggccataatgaccatcattatgtttggaggaaaacggcggatgcttgtaagccgaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122100 lncRNA upstream 136 4305312 ~ 4305573 (+) True G107580
TU120908 lncRNA upstream 3718 4299818 ~ 4301991 (+) False deptor
TU120903 lncRNA upstream 3718 4300835 ~ 4301991 (+) True deptor
TU120907 lncRNA upstream 5466 4297887 ~ 4300243 (+) False deptor
TU122102 lncRNA downstream 189 4306188 ~ 4306575 (+) True G107582
TU122157 lncRNA downstream 42868 4348867 ~ 4349162 (+) True G107611
TU122158 lncRNA downstream 47242 4353241 ~ 4353525 (+) True G107612
TU122159 lncRNA downstream 47585 4353584 ~ 4353832 (+) True G107613
TU122160 lncRNA downstream 49030 4355029 ~ 4355288 (+) True G107614
XM_036935488.1 mRNA upstream 3173 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 3173 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 3173 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 3173 4237055 ~ 4302536 (+) False deptor
XM_036935442.1 mRNA upstream 185967 4113122 ~ 4119742 (+) True LOC110507036
XM_036935521.1 mRNA downstream 21984 4327983 ~ 4538057 (+) False col14a1a
XM_036935515.1 mRNA downstream 21987 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA downstream 21988 4327987 ~ 4569652 (+) False col14a1a
XM_036935508.1 mRNA downstream 21991 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA downstream 21991 4327990 ~ 4572381 (+) True col14a1a
TU120937 other upstream 167213 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 167213 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 278115 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 505357 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 438169 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 502740 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 551912 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 830357 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 990180 5296179 ~ 5299933 (+) True G108354

Expression Profile