RNA id: TU122179


Basic Information

Item Value
RNA id TU122179
length 235
lncRNA type intronic
GC content 0.42
exon number 2
gene id G107627
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4382598 ~ 4383867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTATTGTCTTATTGTGGTGGTGTGGAGAGTTGTGTTATTGTCTTATTGTGGTGGTGTGGAGAGTTGTGTTATTGTCTTATTGTGGGGGTGTGGAGAGTTGTGTTATTGTCTTATTGTGGAGGTGTGGAGAGTTGTGTTATTGTCTTATTGTGGAGGTGTGGAGAGTTGTGTTATTGTCTTATTGTGGGGGTGTGGAGAGTTGTGTTATTGTCTTATTGTGGAGGTGTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122177 lncRNA upstream 3284 4378858 ~ 4379314 (+) True G107625
TU122165 lncRNA upstream 17890 4364471 ~ 4364708 (+) True G107618
TU122160 lncRNA upstream 27310 4355029 ~ 4355288 (+) True G107614
TU122159 lncRNA upstream 28766 4353584 ~ 4353832 (+) True G107613
TU122158 lncRNA upstream 29073 4353241 ~ 4353525 (+) True G107612
TU122188 lncRNA downstream 3660 4387527 ~ 4388933 (+) False G107632
TU122186 lncRNA downstream 4467 4388334 ~ 4388933 (+) True G107632
TU122202 lncRNA downstream 30508 4414375 ~ 4416057 (+) True G107645
TU122225 lncRNA downstream 81093 4464960 ~ 4466164 (+) True G107664
TU122243 lncRNA downstream 142700 4526567 ~ 4527074 (+) True G107680
XM_036935488.1 mRNA upstream 80062 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 80062 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 80062 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 80062 4237055 ~ 4302536 (+) False deptor
XM_036935442.1 mRNA upstream 262856 4113122 ~ 4119742 (+) True LOC110507036
XM_036935553.1 mRNA downstream 219091 4602958 ~ 4648521 (+) False LOC110520696
XM_036935527.1 mRNA downstream 219092 4602959 ~ 4654733 (+) False LOC110520696
XM_036935529.1 mRNA downstream 219092 4602959 ~ 4654733 (+) False LOC110520696
XM_036935531.1 mRNA downstream 219092 4602959 ~ 4654733 (+) False LOC110520696
XM_036935534.1 mRNA downstream 219092 4602959 ~ 4654733 (+) False LOC110520696
TU120937 other upstream 244102 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 244102 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 355004 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 582246 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 360301 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 424872 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 474044 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 752489 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 912312 5296179 ~ 5299933 (+) True G108354

Expression Profile