RNA id: TU122225


Basic Information

Item Value
RNA id TU122225
length 258
lncRNA type intronic
GC content 0.50
exon number 2
gene id G107664
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4464960 ~ 4466164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGAAGGACAGGGATAGATTCCTGAGGGGACATAAGGAGAGTGAGAAGGGAAGCGAGACATTGAGGGAAGAGGAAGGACAGGGATAGATTCCTGAGGAGACATAAGGACAGTGAGAAGGGAAGCAGGACGTTGAGGGAAGAGGAAGGACAGGGATAGATTCCTGAGGAGACATAAGGAGAGTGAGAAGGGAAGAGGAAGGACAGGGATAGATTCCTGAGGGGACATAAGGACAGTGAGAAGGGAAACGAGACATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122202 lncRNA upstream 48903 4414375 ~ 4416057 (+) True G107645
TU122188 lncRNA upstream 76027 4387527 ~ 4388933 (+) False G107632
TU122186 lncRNA upstream 76027 4388334 ~ 4388933 (+) True G107632
TU122179 lncRNA upstream 81093 4382598 ~ 4383867 (+) True G107627
TU122177 lncRNA upstream 85646 4378858 ~ 4379314 (+) True G107625
TU122243 lncRNA downstream 60403 4526567 ~ 4527074 (+) True G107680
TU122247 lncRNA downstream 73472 4539636 ~ 4540300 (+) False G107682
TU122246 lncRNA downstream 74373 4540537 ~ 4541278 (+) True G107682
TU122260 lncRNA downstream 115152 4581316 ~ 4581677 (+) True G107693
TU122264 lncRNA downstream 130022 4596186 ~ 4599513 (+) True G107697
XM_036935488.1 mRNA upstream 162424 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA upstream 162424 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA upstream 162424 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA upstream 162424 4237055 ~ 4302536 (+) False deptor
XM_036935442.1 mRNA upstream 345218 4113122 ~ 4119742 (+) True LOC110507036
XM_036935553.1 mRNA downstream 136794 4602958 ~ 4648521 (+) False LOC110520696
XM_036935527.1 mRNA downstream 136795 4602959 ~ 4654733 (+) False LOC110520696
XM_036935529.1 mRNA downstream 136795 4602959 ~ 4654733 (+) False LOC110520696
XM_036935531.1 mRNA downstream 136795 4602959 ~ 4654733 (+) False LOC110520696
XM_036935534.1 mRNA downstream 136795 4602959 ~ 4654733 (+) False LOC110520696
TU120937 other upstream 326464 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 326464 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 437366 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 664608 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 278004 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 342575 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 391747 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 670192 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 830015 5296179 ~ 5299933 (+) True G108354

Expression Profile