RNA id: TU148466


Basic Information

Item Value
RNA id TU148466
length 295
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G128745
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28692952 ~ 28693246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggactttcttgggcgccgtgaagccttcttcacaacaattgaaccgctctccttgaagttcttgatgatccgataaatggttgatttaggtgcgatcttactggcagcaatatccttgcctgtgaagccctttttgtgcaaagcaatgatgacggcacgtgtttccttgcaggtaaccatggttgacagaggaagaacagtgATTCCAAGCACCAACCTTCTGTTtgcattttccaattaagaacattcaaaacaaaagtgaaaagataTTAGACAACGATAGGACAAAGTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148462 lncRNA upstream 2553 28690095 ~ 28690399 (+) True G128741
TU148361 lncRNA upstream 3382 28688253 ~ 28689570 (+) True G128640
TU148373 lncRNA upstream 48926 28599287 ~ 28644026 (+) True G128652
TU148440 lncRNA upstream 57966 28633596 ~ 28634986 (+) True G128719
TU148400 lncRNA upstream 92343 28568316 ~ 28600609 (+) True G128679
TU148467 lncRNA downstream 100 28693346 ~ 28693605 (+) True G128746
TU148468 lncRNA downstream 446 28693692 ~ 28693967 (+) True G128747
TU148482 lncRNA downstream 19746 28712992 ~ 28718735 (+) True G128760
TU148354 lncRNA downstream 74973 28768219 ~ 28773582 (+) True G128638
TU148539 lncRNA downstream 158331 28851577 ~ 28851809 (+) True G128813
XM_021557031.2 mRNA upstream 5622 28537535 ~ 28687330 (+) False LOC110485836
XM_021557045.2 mRNA upstream 5622 28537535 ~ 28687330 (+) False LOC110485836
XM_021557037.2 mRNA upstream 5622 28583743 ~ 28687330 (+) False LOC110485836
XM_021557053.2 mRNA upstream 5622 28602655 ~ 28687330 (+) True LOC110485836
XR_002468004.2 mRNA upstream 11345 28537533 ~ 28681607 (+) False LOC110485836
XM_036944448.1 mRNA downstream 26690 28719936 ~ 28780547 (+) False LOC110485894
XM_036944439.1 mRNA downstream 27529 28720775 ~ 28780547 (+) False LOC110485894
XM_036944441.1 mRNA downstream 27936 28721182 ~ 28780547 (+) False LOC110485894
XM_036944436.1 mRNA downstream 27937 28721183 ~ 28780547 (+) False LOC110485894
XM_036944443.1 mRNA downstream 27937 28721183 ~ 28780547 (+) False LOC110485894
TU148197 other upstream 145037 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 603507 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 975789 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1389397 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1502359 27189991 ~ 27190593 (+) True G127644
TU148570 other downstream 238810 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 246653 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 784371 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 791387 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 906780 29600026 ~ 29641096 (+) True G130308

Expression Profile