RNA id: TU158112


Basic Information

Item Value
RNA id TU158112
length 447
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G137353
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36250865 ~ 36251311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAACAGGGGCTAATCTATCAGACTGGTTTCTAAAAGACAACCAAAACAATGACAATTCAGACTTCTATATTATGTGACAGGTTAAACCTAAACTATTTGAACACAAATTCAACATGGAACATTCTAACACAACACATACTTTCTCCTAGTTCTGACAAACATCACTTAAAAGCAAGCAAGCCAACAAGCAAGCAATGACCCTTTTATCATAAAAACATTCTTATATCTTTCACATGTTTTCAGAGCTCAATATCTATCTCCTTAATACTCATCATCCTAAACTTTAGGAGGGGGACAATGAGGAAATAAACTATTCCTCAGATCCATTGTGCCAACTCTTGATGGCGCCATTCAAACAATTTTCTTATTTCGTACTGACATTCTTCAGCATTCTTCAAAATAATCTGTATAAAGAACTGGACTTGTGAATCAACAAGCCGTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158111 lncRNA downstream 162 36250397 ~ 36250703 (-) True G137352
TU158091 lncRNA downstream 14102 36236547 ~ 36236763 (-) True G137343
TU158089 lncRNA downstream 15959 36234668 ~ 36234906 (-) True G137341
TU158076 lncRNA downstream 54782 36195818 ~ 36196083 (-) True G137328
TU158068 lncRNA downstream 73258 36177353 ~ 36177607 (-) True G137320
TU158113 lncRNA upstream 614 36251925 ~ 36252164 (-) True G137354
TU158120 lncRNA upstream 11960 36263271 ~ 36263559 (-) True G137361
TU158121 lncRNA upstream 12644 36263955 ~ 36264320 (-) True G137362
TU158135 lncRNA upstream 44443 36295754 ~ 36296042 (-) True G137376
TU158242 lncRNA upstream 123134 36374445 ~ 36374667 (-) True G137481
XM_021561128.2 mRNA downstream 34503 36189587 ~ 36216362 (-) False LOC110488753
XM_036947391.1 mRNA upstream 47752 36299063 ~ 36316470 (-) False LOC110488840
XM_036947388.1 mRNA upstream 47752 36299063 ~ 36316871 (-) False LOC110488840
XM_021561266.2 mRNA upstream 47752 36299063 ~ 36318192 (-) False LOC110488840
XM_036947395.1 mRNA upstream 47752 36299063 ~ 36323232 (-) False LOC110488840
XM_036947385.1 mRNA upstream 47752 36299063 ~ 36323327 (-) False LOC110488840
TU157404 other downstream 575160 35674431 ~ 35675705 (-) False drd2l
TU157405 other downstream 575238 35674298 ~ 35675627 (-) False drd2l
TU157060 other downstream 943136 35306367 ~ 35307729 (-) True G136399
TU156114 other downstream 1646387 34604215 ~ 34604478 (-) True G135575
TU155089 other downstream 2384928 33865488 ~ 33865937 (-) True G134668
TU158240 other upstream 118693 36370004 ~ 36370328 (-) True G137479
TU158620 other upstream 382882 36634193 ~ 36639005 (-) True G137839
TU158866 other upstream 574555 36825866 ~ 36828397 (-) False G138080
TU158919 other upstream 593622 36844933 ~ 36849345 (-) True pnrc2
TU159561 other upstream 1209563 37460874 ~ 37463758 (-) True LOC110501508

Expression Profile