RNA id: TU169511


Basic Information

Item Value
RNA id TU169511
length 409
lncRNA type intronic
GC content 0.55
exon number 2
gene id G147791
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44854169 ~ 44858589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccagagccactgactgctgccttctgccgcctccgatatagctttgattgccgaacgctggctctggcccttaattccaaggtctctaagcagtctggttgtagatgtTGCCACAAAACCTCTGCAGCCCACCTCCACTGGTCGGACTTCTGTGTTCCAGCCATGATGCCGTGCTTCGGCAGCTAGATCGGCATAGCGCAGATGCTTTCGCTCATAAGCCTCATCTACTGAGTCCTCCCAGGGTACTGTGAGCTCAATGATGAAGACCTTCTTGAGTGAACGGGACCAGAGCACCATGTCTTAGGGTGGTGGTTGCGATCTCCGGAGGAAACACAAGTTGCCGGCCAATGTCAGCTAGCATTTTCCAGTCGCGGGCCAAGCGCAGCTGGTCTCGCTCTAATGGTGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169127 lncRNA downstream 99963 44753975 ~ 44754206 (-) True G147434
TU169036 lncRNA downstream 214892 44638960 ~ 44639277 (-) True G147354
TU169030 lncRNA downstream 230935 44611210 ~ 44623234 (-) False G147352
TU169517 lncRNA upstream 1207 44859796 ~ 44860106 (-) True G147797
TU169471 lncRNA upstream 7023 44865612 ~ 44865949 (-) True G147753
TU169522 lncRNA upstream 9884 44868473 ~ 44868713 (-) True G147802
TU169523 lncRNA upstream 11559 44870148 ~ 44870674 (-) True G147803
TU169524 lncRNA upstream 12291 44870880 ~ 44871402 (-) True G147804
XR_005036931.1 mRNA downstream 116191 44730092 ~ 44737978 (-) True LOC118940389
XR_005036925.1 mRNA downstream 247352 44577252 ~ 44606817 (-) False LOC110490449
LOC110501628 mRNA upstream 265124 45123713 ~ 45124844 (-) True LOC110501628
XM_036949646.1 mRNA upstream 275887 45134476 ~ 45168258 (-) False LOC110490531
XM_036949640.1 mRNA upstream 275887 45134476 ~ 45168260 (-) False LOC110490531
XM_036933947.1 mRNA upstream 312609 45171198 ~ 45171856 (-) True LOC118936755
XR_005036947.1 mRNA upstream 419805 45278394 ~ 45394968 (-) False si:ch211-272n13.3
TU168978 other downstream 275414 44571948 ~ 44578755 (-) False LOC110490449
TU168984 other downstream 275414 44571948 ~ 44578755 (-) False LOC110490449
TU168994 other downstream 275414 44571948 ~ 44578755 (-) False LOC110490449
TU168976 other downstream 275414 44572065 ~ 44578755 (-) False LOC110490449
TU168885 other downstream 418052 44434790 ~ 44436117 (-) True LOC110490352
TU169520 other upstream 4496 44863085 ~ 44863559 (-) True G147800
TU169728 other upstream 275979 45134568 ~ 45168099 (-) True LOC110490531
TU172175 other upstream 1985591 46844180 ~ 46921593 (-) False tmem86a
TU172204 other upstream 1987563 46846152 ~ 46849616 (-) True G150290
TU172551 other upstream 2106145 46964734 ~ 46993665 (-) True G150618

Expression Profile