RNA id: TU235493



Basic Information


Item Value
RNA id TU235493
length 446
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G208000
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95603454 ~ 95603899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCCCAGGCAAGCGTGCTTACGACACtcctgtgtgtttttttgtgtggatCTGTCTGTGCGACTACCTGTTGATCACAGGCCTCTCTCTGATCTGGATGGTGGAAAGCTCCTGGTTGTTGCAGTTGGGCAGACTGGAGCTCTTTTTCCTGTGTCGTCTGGAGCAGCAGGATGACAGGCCGGAGGGAGACGACGACAGGGACGAGGTTCGAGATCCGGATTTGTTCACCATGGTTACCTCCATACAGTTGGTCTCGAAAGTCTGCTCGTCAATAAACTCAtgattctggagagagagagagagaaggagacatggAAATCAATGGTAATAGTGGAGGCTGGTGGATGGCGAAATTGGGAGGATTGGGCTCCTTGTAATGGATGAATTGGAATGAATGTAACTGTATCAAAACACATTTAATGTTTTCTATGTGACTGATACctttcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235490 lncRNA downstream 1582 95601605 ~ 95601872 (-) True G207997
TU235489 lncRNA downstream 2749 95600375 ~ 95600705 (-) True G207996
TU235488 lncRNA downstream 3276 95599914 ~ 95600178 (-) True G207995
TU235486 lncRNA downstream 9811 95593419 ~ 95593643 (-) True G207993
TU235481 lncRNA downstream 19526 95583687 ~ 95583928 (-) True G207988
TU235498 lncRNA upstream 12191 95616090 ~ 95616405 (-) True G208003
TU235502 lncRNA upstream 16782 95620681 ~ 95620903 (-) True G208007
TU235505 lncRNA upstream 20191 95624090 ~ 95625006 (-) True G208010
TU235355 lncRNA upstream 27757 95631656 ~ 95632062 (-) True parietopsin
TU235352 lncRNA upstream 28398 95632297 ~ 95633415 (-) True G207878
LOC118944198 mRNA downstream 332182 95271093 ~ 95271272 (-) True LOC118944198
XM_036959906.1 mRNA downstream 478907 95097379 ~ 95124547 (-) True LOC110502417
XM_021577703.2 mRNA downstream 583025 95015675 ~ 95020429 (-) True LOC110500368
trnay-gua mRNA downstream 593763 95009602 ~ 95009691 (-) True trnay-gua
XM_036959842.1 mRNA downstream 628541 94959943 ~ 94974913 (-) True LOC110500345
XM_021580524.2 mRNA upstream 24550 95628449 ~ 95631972 (-) False parietopsin
XM_036960040.1 mRNA upstream 31997 95635896 ~ 95664503 (-) True LOC110502485
XM_021577854.2 mRNA upstream 99460 95703359 ~ 95721115 (-) True LOC110500466
XR_002475062.2 mRNA upstream 278232 95882131 ~ 95883679 (-) True LOC110533932
XM_036960073.1 mRNA upstream 447403 96051302 ~ 96092405 (-) True LOC110502500
TU235447 other downstream 79227 95523968 ~ 95524227 (-) True G207959
TU235317 other downstream 194740 95377723 ~ 95408714 (-) True G207858
TU234691 other downstream 827098 94762662 ~ 94776356 (-) True G207340
TU234581 other downstream 973715 94629437 ~ 94629739 (-) True G207249
TU234576 other downstream 986222 94616915 ~ 94617232 (-) True G207244
TU235358 other upstream 329 95604228 ~ 95609786 (-) True G207884
TU235350 other upstream 78138 95682037 ~ 95686864 (-) False G207876
TU235346 other upstream 78724 95682623 ~ 95686864 (-) True G207876
TU235579 other upstream 225475 95829374 ~ 95832362 (-) True G208077
TU236021 other upstream 530178 96134077 ~ 96134472 (-) True G208472

Expression Profile