RNA id: TU235844


Basic Information

Item Value
RNA id TU235844
length 1906
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G208316
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96011026 ~ 96013459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTACAGTTACCAAAAGCCATGCAATATCTACAGCTTTTATCTATGAACCCTCTAATGTACTTTGTTTTCAATAAATAGTACTAATTTATCCACCTCTGGTATTTGTACATTTACAGTAGatacacatacaggtaactgccaaaatgaaGGAACAACTTGaggaaatgagggatacaaataTATTGAAACCAGgttcttccacacaggtgtggttcctgattGAAATGCAGAGTTGACTGTTATTTCGGCCACCAGGGACGAAGAGAtctcagttagttagttagttagttagttagttagttagtctcACTTAGTGACTCTGAAagagaggggtctcaaaggagcataagGGATTtaaagggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcgtgttcACTTCAGTCCCCAGATTTCAACCCAACTGAACATTCTGGAGCGGCTCCTCATTTTCCACCCCCGTCAACAAGACACCGAACTATGGCATTTCTTGTGGAGGAACGGTGTTGCATCCTTCCAATGGAGTTTTAGACTCCTGTAGAATCGGTGCCAAggagcattgaagctgttctggctcgtggtgcccCAACAACCtattattaagacactttatgttggggtttcctttatcttggcagCTACCTGTATATTTACATTGCTGTTGTGGAATGTGTTTCCCTCGTTTTTATCCCAACCTGATGAAACCTAATAATTAGTCCTTTCTTAGAGTCAGTGGCGGCTGGTGTCAttttgtttgatgtgtttgatagctttccattttttttcaacgtcagccattacaatgaacctGTCCTCCAATTTCTCccaccaccagcctcctctgctttGAGTTTTAAAGATTGCACTCAAGGACAAAACAGACCGTGCCGATGAATGGCTGAAAGCAGCGTTTGGCCTTCCTTTCTCCTCTGACAACAGAACGTCAGCCCTCGTTTTCAGTTTTCCGACAATCCTACATGTTGAATCACCACCATCCGTTCGACACCCTTCAGGTGATCTGTTGCACACTGTCAACGTTCCTTATTGTGTTGTCTTGCCCTAAAGTAGTTCATTCATTCAACAGAAAGAGAATGACTAGAATTCATTCAACAGATATAGAATGACTAGATTCTAGGATTTCATTCCACAGGATCCTCTGAAGACATTTCTGTCTGGTCTCGTTGTCCGGGACTTAAACCtgggtccagcgactgtcaacCCAACACCTTAGCCATTACACCAAGAGATCCCGTTTTTTTTTCCTGGATCAAAACGGGACTTAGGTGATGGGCATGCATGGTGGGGGGGGCATGTCCATTTTATGCATTTTGACAGAGATAAAATgtaatttcttgcaattctacacattctgcCTTGGTTTATGCTATCTGAGGGACTCGAACGTCATAACAAATAAATGGGGGCCTCATGCCATGACAAAAATACTCCTGAATGCATCATTTTTTGGAACTTTaaattctccctgactgtctagcttttatttcgGTGTTTGTTAGTTGTCAAATAAAATcttagttaaaaaatatataggtgTATTATCTTTTcaacatactttatatctggttaAAGCTattttaagtttacactgaaaacgtTTTCACATCCCGAAAATGATTGGACATAGGCGGTCTGAAAAGAAAATGATGCGGCCCGCCCAAGACTTTCCTCTGCAGACAAAACCCTGAGATCCGGACCTCTGGACAAGGTCTCTAAGTATTCACTGTCATTCCACAGCATCCTCTGAAGACTGCAGACATTTTTGCCTGGCCTCGGCATCCTCGTTGATGGTGACCTTCTTGTTCCTTTTGGGGTCAATCCAGGAGTTACGTATGACCGCGTTGTTGGGCAGCGGGTCAGCCTCTATGATGCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235824 lncRNA downstream 8198 96000916 ~ 96002828 (-) True G208306
TU235740 lncRNA downstream 37879 95972833 ~ 95973147 (-) True G208226
TU235729 lncRNA downstream 49985 95960829 ~ 95961041 (-) True G208215
TU235679 lncRNA downstream 111995 95871820 ~ 95899031 (-) True G208170
TU235676 lncRNA downstream 140811 95869578 ~ 95870215 (-) True G208168
TU235848 lncRNA upstream 11945 96024926 ~ 96026020 (-) True G208319
TU235849 lncRNA upstream 14065 96027046 ~ 96027340 (-) True G208320
TU235826 lncRNA upstream 36435 96049416 ~ 96049839 (-) True G208308
TU235870 lncRNA upstream 55850 96068831 ~ 96115749 (-) False G208341
TU235872 lncRNA upstream 55850 96068831 ~ 96115749 (-) False G208341
XR_002475062.2 mRNA downstream 127347 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 289911 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 346523 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 379054 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 739754 95271093 ~ 95271272 (-) True LOC118944198
XM_036960073.1 mRNA upstream 38321 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 117330 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 620860 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 634149 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 634149 96647130 ~ 96897073 (-) False LOC110500541
TU235579 other downstream 178664 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 324162 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 324162 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 401240 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 486799 95523968 ~ 95524227 (-) True G207959
TU236021 other upstream 121096 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 408885 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1403840 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1488191 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1605878 97618859 ~ 97619212 (-) True G209841

Expression Profile