RNA id: TU235848


Basic Information

Item Value
RNA id TU235848
length 1095
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G208319
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96024926 ~ 96026020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcctgtatttggctccatccatcttcctatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaacagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatgtctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggatggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggcttaaaCTTCTTCagaacagtatctcggacctgcctggtgtgttccttgttcttcgtgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattgtatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgtccaatttttcagttttggatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacattctgCTAGACAAATCTACATTCTCCTGAGCTCTCTGTGTCCTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235845 lncRNA downstream 11467 96011026 ~ 96013459 (-) True G208316
TU235844 lncRNA downstream 11945 96011026 ~ 96012981 (-) False G208316
TU235824 lncRNA downstream 22098 96000916 ~ 96002828 (-) True G208306
TU235740 lncRNA downstream 51779 95972833 ~ 95973147 (-) True G208226
TU235729 lncRNA downstream 63885 95960829 ~ 95961041 (-) True G208215
TU235849 lncRNA upstream 1026 96027046 ~ 96027340 (-) True G208320
TU235826 lncRNA upstream 23396 96049416 ~ 96049839 (-) True G208308
TU235870 lncRNA upstream 42811 96068831 ~ 96115749 (-) False G208341
TU235872 lncRNA upstream 42811 96068831 ~ 96115749 (-) False G208341
TU235874 lncRNA upstream 42811 96068831 ~ 96069357 (-) True G208341
XR_002475062.2 mRNA downstream 141247 95882131 ~ 95883679 (-) True LOC110533932
XM_021577854.2 mRNA downstream 303811 95703359 ~ 95721115 (-) True LOC110500466
XM_036960040.1 mRNA downstream 360423 95635896 ~ 95664503 (-) True LOC110502485
XM_021580524.2 mRNA downstream 392954 95628449 ~ 95631972 (-) False parietopsin
LOC118944198 mRNA downstream 753654 95271093 ~ 95271272 (-) True LOC118944198
XM_036960073.1 mRNA upstream 25282 96051302 ~ 96092405 (-) True LOC110502500
XM_036960080.1 mRNA upstream 104291 96130311 ~ 96370206 (-) False LOC110502509
LOC110500576 mRNA upstream 607821 96633841 ~ 96640404 (-) True LOC110500576
XM_036960096.1 mRNA upstream 621110 96647130 ~ 96897073 (-) False LOC110500541
XM_036960106.1 mRNA upstream 621110 96647130 ~ 96897073 (-) False LOC110500541
TU235579 other downstream 192564 95829374 ~ 95832362 (-) True G208077
TU235350 other downstream 338062 95682037 ~ 95686864 (-) False G207876
TU235346 other downstream 338062 95682623 ~ 95686864 (-) True G207876
TU235358 other downstream 415140 95604228 ~ 95609786 (-) True G207884
TU235447 other downstream 500699 95523968 ~ 95524227 (-) True G207959
TU236021 other upstream 108057 96134077 ~ 96134472 (-) True G208472
TU236221 other upstream 395846 96421866 ~ 96422224 (-) True G208658
TU237272 other upstream 1390801 97416821 ~ 97417188 (-) True G209560
TU237607 other upstream 1475152 97501172 ~ 97502394 (-) True G209802
TU237655 other upstream 1592839 97618859 ~ 97619212 (-) True G209841

Expression Profile