RNA id: XR_005041383.1


Basic Information

Item Value
RNA id XR_005041383.1
length 1484
RNA type mRNA
GC content 0.45
exon number 6
gene id glipr2l
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20648378 ~ 20652052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttaaattaaatgttcTTGAAAATCTCagttttggacgagactgactttatgaccagaATGATCCtactatttacactttgtagtcaatttggACACTAGAATACATTTTTCTGACtaatatcgatgccacataggctcACCGTAGTAAAACTGTGTAAAAGTGCTTCTAAACAGTTAAACTGCTCTTAATTTAGTTAGGGTAGAATGTCCAGCTCACATTTCAAGCAGAAAGCAGGAATCTCAGGCCATAAAAGGGCATGTGTCTCATAGagatgatgtcatcagaacagccATGCTGGGTCTCCCCTTTcagttacacagagagagggagcctgtgtgttacagagggataaggggagagggaggataatGTGTGTGTGGCCAAGGAAAAGGCAGGGTGTTTAAGAGTGAGAGAGGACAGAAGCAGAAGTTTTGAGAAAGACTAGTTTACTAGAGGGAGAAGTGTGAGCGAGAGGAACAAAGGCTACGGAGAAAAATAGGAAtacagaaagggagagggagagagggacagaaacaaagTTATAGCAGCTGTTTCAGACCGTCAGAGAGCGGACTGAGCCAAAGGGAACAAGAGAGAGTTTCTGTGTCATGGGCAAATCAGcttctaAGCAGTTTTCGGAGGAAGTGTTGCGGAGTCATAATGAGTATCGTAGGAAGCACCAGACACCCCCTCTGAAGCTGAGCAGCAAGCTGAGTAGCGATGCCACTAGGTATGCTGAGTCTCTGGCCAGCACACGGATCCTGAAGCACAGTGTTGAGTCCAGTAAGGGGAGCTGTGGCGAGAACCTGGCCTGGGCCTCCTATGACCAGCCAGGGAAGGATGTGGCTGACCGCTGGTATGACGAGGTCAAACAATACAACTTCAACCGCCCCGGCTTCTCCTCTGGCACAGgtCATTTCACAGCAATGGTGTGGAAGGGCAGTAAGAAGCTGGGTGTGGGGAAGGCCAGTGCGCCAGATGGCTCGTCATTCGTGGTAGCCAGGTACTTTCCAGCAGGGAACATCACCAACCAGGGACACTTTGACAACAACGTCCTGCCGCCCAAGGACTAAGGAACATACTGACCCATCCAAAAGACATTTGCACTTTGACTTGTGACCTTGActtacatgtatgtatgtgtgtgtatgtatgtgtttgtgtgtgtgtatgtgtgtgtgtgacttaacaaatgaatgaacaaaaatataggcACACCATTGACCAAACCATGCCAGCTGTGTCTTCCGGAGGTGTACCAGCCACCCCACTGGGTTTCGACCTACTCATTCCATCGATAGTGGGAGTAGGGATTTTACACATAGTAAAATAAtttctggtttaaaaaaaaatagtacCAGTcaggtttggacacctactcattcaagggtttttctttattttactattttctacattgtagaataacagtgaagacctcccaactatgaaataacacatatggaatcacgtagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266935 lncRNA downstream 95928 20552215 ~ 20552450 (-) True G233514
TU266912 lncRNA downstream 114882 20529880 ~ 20533496 (-) True G233491
TU266895 lncRNA downstream 140013 20506750 ~ 20508365 (-) True G233479
TU266894 lncRNA downstream 142752 20505226 ~ 20505626 (-) True G233478
TU266890 lncRNA downstream 147031 20501109 ~ 20501347 (-) True G233474
TU267374 lncRNA upstream 2145 20654197 ~ 20654460 (-) True G233914
TU267377 lncRNA upstream 4149 20656201 ~ 20656503 (-) True G233917
TU267407 lncRNA upstream 50153 20702205 ~ 20709007 (-) True G233942
TU267420 lncRNA upstream 77770 20729822 ~ 20730058 (-) True G233955
TU267422 lncRNA upstream 79926 20731978 ~ 20732335 (-) True G233957
XR_002471931.2 mRNA downstream 52823 20590446 ~ 20595555 (-) False LOC110512925
XR_005041371.1 mRNA downstream 52823 20593202 ~ 20595555 (-) True LOC110512925
trnat-ugu-32 mRNA downstream 56250 20592056 ~ 20592128 (-) True trnat-ugu-32
trnat-ugu-31 mRNA downstream 65026 20583280 ~ 20583352 (-) True trnat-ugu-31
XM_021593013.2 mRNA downstream 66846 20563648 ~ 20581532 (-) True LOC110512912
XM_021593073.2 mRNA upstream 275902 20927954 ~ 20968368 (-) False si:dkey-12j5.1
XM_021593069.2 mRNA upstream 279761 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971660.1 mRNA upstream 279761 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971663.1 mRNA upstream 279761 20931813 ~ 20968368 (-) True si:dkey-12j5.1
XM_021593101.2 mRNA upstream 439735 21091787 ~ 21100107 (-) False LOC110513019
TU266934 other downstream 96381 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 891760 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 999749 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1049277 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 1366240 19159300 ~ 19282138 (-) True LOC110511176
TU267728 other upstream 526545 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 526545 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 793436 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 817609 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 846356 21498408 ~ 21498832 (-) True G234621

Expression Profile