RNA id: TU265301


Basic Information

Item Value
RNA id TU265301
length 479
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110511176
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19065512 ~ 19282368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAACTCAGTGCAGCCTCATCTCGGAGAACGCCATTGAgaaagagtgagtgaaagagagagagcgagctagagagaaatagagcagatcagaggaagagaaaagaaagagacagagcgacaTACTCTGTGAAAAAAAGTGTCCATAATTCGTCACCCTTTCTTTCTCAATTTCCATCACAAACCCTACCGGTGCTTGGATGAACCAAAACCTATCGATCAGTCAGTGCTACACCTGGATCTCCTGACCAGCTCCGAGCAGGCATGTCCCGAAGGAAGCAGAGCAACCCCAGGCAAATTAAACGTGAAGAAGATGGCAGTGGAGAAGCAGGGGAGTCAGACATGGACGGGCAGTGTGAGAAGACCAGACACCCAGCTATAGGACCAGAGGATTGGGATGGACCAAGAGAGCTGGATGCGTTCCACAAGGATGGGGAGCGTCGGATCCACAGCCGCCAGCAGCTCCCTGTGGGAACCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265337 lncRNA downstream 28317 19130646 ~ 19130983 (-) True G232065
TU265336 lncRNA downstream 29544 19129473 ~ 19129756 (-) True G232064
TU265335 lncRNA downstream 32269 19126692 ~ 19127031 (-) True G232063
TU265334 lncRNA downstream 37356 19121744 ~ 19121944 (-) True G232062
TU265331 lncRNA downstream 42732 19116090 ~ 19116568 (-) True G232059
TU266200 lncRNA upstream 105894 19388032 ~ 19388986 (-) True G232835
TU266156 lncRNA upstream 122781 19404919 ~ 19408499 (-) False G232802
TU266157 lncRNA upstream 122781 19404919 ~ 19408499 (-) False G232802
TU266158 lncRNA upstream 122781 19404919 ~ 19408499 (-) True G232802
TU266238 lncRNA upstream 189068 19471206 ~ 19471551 (-) True G232873
XM_021592216.2 mRNA downstream 135148 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA downstream 135148 18826879 ~ 19024152 (-) True LOC110511207
XM_021592221.2 mRNA downstream 256827 18826879 ~ 18902473 (-) False LOC110511207
XM_021592238.2 mRNA downstream 323970 18826879 ~ 18835330 (-) False LOC110511207
XM_021592293.2 mRNA downstream 361931 18793985 ~ 18797369 (-) True LOC110511312
XM_036971122.1 mRNA upstream 133916 19416054 ~ 19424630 (-) False rims2a
XM_036971115.1 mRNA upstream 133916 19416054 ~ 19424631 (-) False rims2a
XM_036971108.1 mRNA upstream 133916 19416054 ~ 19582363 (-) False rims2a
XM_036971097.1 mRNA upstream 133916 19416054 ~ 19582365 (-) False rims2a
XM_036971132.1 mRNA upstream 133916 19416054 ~ 19582365 (-) False rims2a
TU264859 other downstream 557425 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 1028246 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 1029214 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 1181391 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 2110956 17045025 ~ 17048344 (-) True G229707
TU266171 other upstream 259964 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 365948 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 474066 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1269645 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 1366633 20648771 ~ 20651696 (-) True glipr2l

Expression Profile