RNA id: TU262748


Basic Information

Item Value
RNA id TU262748
length 540
RNA type TUCP
GC content 0.32
exon number 2
gene id G229707
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17043792 ~ 17048344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaattggcaggtaccatcacgaatttgtcatgctcaaaaaatttttgatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262743 lncRNA downstream 2105 17041094 ~ 17042920 (-) True G229705
TU262742 lncRNA downstream 4190 17040091 ~ 17040835 (-) True G229704
TU262725 lncRNA downstream 23332 17021285 ~ 17021693 (-) True G229687
TU262724 lncRNA downstream 24223 17020572 ~ 17020802 (-) True G229686
TU262723 lncRNA downstream 24640 17019996 ~ 17020385 (-) True G229685
TU262818 lncRNA upstream 142607 17190951 ~ 17191207 (-) True G229777
TU262946 lncRNA upstream 200372 17248716 ~ 17249318 (-) True G229901
TU263015 lncRNA upstream 290974 17339318 ~ 17341083 (-) True G229964
TU263020 lncRNA upstream 300698 17349042 ~ 17349266 (-) True G229969
TU263027 lncRNA upstream 313573 17361917 ~ 17362226 (-) True G229976
XM_036970564.1 mRNA downstream 218915 16805002 ~ 16826110 (-) False cep162
XM_036970565.1 mRNA downstream 218915 16805002 ~ 16826110 (-) False cep162
XM_036970566.1 mRNA downstream 218915 16805002 ~ 16826110 (-) True cep162
XM_036970567.1 mRNA downstream 218917 16805002 ~ 16826108 (-) False cep162
XM_036970556.1 mRNA downstream 623048 16195901 ~ 16421977 (-) True LOC110512031
XM_036970571.1 mRNA upstream 27169 17075513 ~ 17188343 (-) False LOC110503762
XM_036970574.1 mRNA upstream 27169 17075513 ~ 17188344 (-) False LOC110503762
XM_036970573.1 mRNA upstream 27169 17075513 ~ 17188345 (-) False LOC110503762
XM_036970575.1 mRNA upstream 27169 17075513 ~ 17188345 (-) False LOC110503762
XM_036970568.1 mRNA upstream 27169 17075513 ~ 17188346 (-) False LOC110503762
TU262393 other downstream 194826 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 205186 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1253860 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1336760 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 1443537 15601015 ~ 15601488 (-) True G228094
TU263791 other upstream 926901 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 1045412 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 1045412 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 1551386 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 2110956 19159300 ~ 19282138 (-) True LOC110511176

Expression Profile