G229964


Basic Information

Item Value
gene id G229964
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17339318 ~ 17341083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU263015
AAGAGCTGAAGAGTAATAGGTGCTACAAATTCCTTTCTGAACATCAACGTTCTCATAACGTTACCATTGTGAATAATCATATTTTGCGACGTTGAGAATTTTTACAAGCAGTGAAGGAACGTATCACATCAATGAAGCACAACTTAATTCAAACAGAAAACGTTCACAAGTATCCACAGCTATCATTCATCTTCTCATCGCCCACACCACAATTCTAGAAACTTTAAGCTTTTGTCAGGGATATGAGAAGCTACAGTAAGTTACATCACCTTAAATATATGCATAGATTTGAATAGTGATGCCAGACCTTGAAGATAGGTTCCTAGtagagactgctgaggggaggacggctcataataatggctggaacggagtatggaatagcatcaaacacatggaaaccatgttttgATGTTTTTAATACCATTCCaagattccgctccagccattgccACGAGTCCTTCCTCCCCAATTAGAGTGCCACCAAAGTTCTGTGATAGATTCACAAACATTTTGGTGCTTTTGGTTCATTTTGTTCCTTTTCTCTGCAAGGTACAAATTAAAAAACCCAAATGAATATCTGGGCACACTGACTCAGTAAGACTAAgagaaaataacaataataaaacaCTTCAGATTTGTGTATGCATGCGATGAGTTAAGAGCTAGAGCCCACTGATGCCGGTGGATTGTGAGGGAAGAGTAATAATAAAAGATGCATGACGTCGGAAGCAGAAAAGGCTAGGAGCTGACACTGAAGCTGCACACTGAAGAGTCTTACCCATCTTTTCAGAGAACTCAgtgataacacacacatacagcccaCGGGAGAAGTCAGAGAGATGATAATCACCCCTCTGAGAGATTAATTAAGTCTATTAGTATCTCTAAATAAGCCTTCCTGGAAAATATGTAACAGGATGAGACATTTGGAGGGAATGGAGGGAAAGTGGTTGACTCTACTGCCTATTGATTGGCCAGAGGGTGAGTGCTTCAGGCGATCAACAAACCTGTAATTTATGTCACATGTTCCACTCTTTACACTCAGATCATGGCAGATAGATATGTTTGTGTGcaagtgtgtctgtgtttgcatgagcgagagagagagacagaggatagcaAGAGTAAAATGATAGTAAAATAGgactgaaaaaagctgtaaaTCATATTTTAAAGTACTCTTTTTATCACACCATTTGATACATTTGTCTAATGATCATTTATGTATTTATATAATCATAAGTACTACACAACATTTTAATATCATACTTCGTAGATACAGTAGCATCAGGTAAATATGATCCAGTgcttaaaaaacaaaaacaagtaaACAAACACAGAGGAAATCAGGGTAAAGTAAGTGGATGCATCAATACCTCTCTTCCATGATTGGCTGGTTGGCTGCCACAGCTACCATAGTTAGGTACAGTATAAAAGAACCACAGTAGACTAGTATGCCATTCATTTAAAGATGATAATATAAGTACCAGCTATCCCCCCGCCCCCCGCCCCCtgcctgacacacaaacacacacacacacacacacacacacacacacacacacacacctgcgtaCACCAAATATCTAACTACATAACTAAGGAGAGACAGCCATGACGAAGTAGAGGTGTTGGTGTGGGGCAGCCCCTCCTGTCTGAGACTGCTGgtaaaggtcaggggtcaggtggtcaggtggggCAGAAGCAGAGAGGTCACAGCACTATGACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263015 True 1734 lncRNA 0.41 2 17339318 17341083

Neighbor

gene id symbol gene type direction distance location
LOC110503762 LOC106605503 coding downstream 150971 17075513 ~ 17188347 (-)
LOC118946294 NA coding downstream 233936 17102465 ~ 17105382 (-)
cep162 cep162 coding downstream 513208 16805002 ~ 16826110 (-)
LOC110512031 grik2 coding downstream 917341 16187381 ~ 16421977 (-)
LOC118946082 NA coding downstream 1373873 15965041 ~ 15965445 (-)
LOC110511923 LOC106579390 coding upstream 599435 17940518 ~ 17947436 (-)
LOC110511898 LOC106579390 coding upstream 616165 17957248 ~ 17964878 (-)
LOC110511884 cg024 coding upstream 626926 17968009 ~ 17969851 (-)
LOC110505118 LOC106579600 coding upstream 634077 17975160 ~ 17985544 (-)
LOC110511860 LOC106579366 coding upstream 692260 18033343 ~ 18048841 (-)
G229901 NA non-coding downstream 90000 17248716 ~ 17249318 (-)
G229777 NA non-coding downstream 148111 17190951 ~ 17191207 (-)
G229709 NA non-coding downstream 292999 17045463 ~ 17046319 (-)
G229707 NA non-coding downstream 293907 17043792 ~ 17048344 (-)
G229705 NA non-coding downstream 296398 17041094 ~ 17042920 (-)
G229969 NA non-coding upstream 7959 17349042 ~ 17349266 (-)
G229976 NA non-coding upstream 20834 17361917 ~ 17362226 (-)
G230093 NA non-coding upstream 117243 17458326 ~ 17458589 (-)
G230442 NA non-coding upstream 137804 17478887 ~ 17479168 (-)
G230467 NA non-coding upstream 186699 17527782 ~ 17578468 (-)
G229380 LOC106605502 other downstream 489119 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 499479 16839389 ~ 16839839 (-)
G228191 LOC106578455 other downstream 1548153 15762029 ~ 15791401 (-)
G228098 fbrl other downstream 1631053 15706234 ~ 15708265 (-)
LOC110503747 lars2 other upstream 752673 18093704 ~ 18154474 (-)
G231652 rn146 other upstream 1258647 18599730 ~ 18601875 (-)
LOC110511176 LOC106579058 other upstream 1818217 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 2201019 19416054 ~ 19652601 (-)

Expression


Co-expression Network