RNA id: TU263015


Basic Information

Item Value
RNA id TU263015
length 1734
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G229964
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17339318 ~ 17341083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGCTGAAGAGTAATAGGTGCTACAAATTCCTTTCTGAACATCAACGTTCTCATAACGTTACCATTGTGAATAATCATATTTTGCGACGTTGAGAATTTTTACAAGCAGTGAAGGAACGTATCACATCAATGAAGCACAACTTAATTCAAACAGAAAACGTTCACAAGTATCCACAGCTATCATTCATCTTCTCATCGCCCACACCACAATTCTAGAAACTTTAAGCTTTTGTCAGGGATATGAGAAGCTACAGTAAGTTACATCACCTTAAATATATGCATAGATTTGAATAGTGATGCCAGACCTTGAAGATAGGTTCCTAGtagagactgctgaggggaggacggctcataataatggctggaacggagtatggaatagcatcaaacacatggaaaccatgttttgATGTTTTTAATACCATTCCaagattccgctccagccattgccACGAGTCCTTCCTCCCCAATTAGAGTGCCACCAAAGTTCTGTGATAGATTCACAAACATTTTGGTGCTTTTGGTTCATTTTGTTCCTTTTCTCTGCAAGGTACAAATTAAAAAACCCAAATGAATATCTGGGCACACTGACTCAGTAAGACTAAgagaaaataacaataataaaacaCTTCAGATTTGTGTATGCATGCGATGAGTTAAGAGCTAGAGCCCACTGATGCCGGTGGATTGTGAGGGAAGAGTAATAATAAAAGATGCATGACGTCGGAAGCAGAAAAGGCTAGGAGCTGACACTGAAGCTGCACACTGAAGAGTCTTACCCATCTTTTCAGAGAACTCAgtgataacacacacatacagcccaCGGGAGAAGTCAGAGAGATGATAATCACCCCTCTGAGAGATTAATTAAGTCTATTAGTATCTCTAAATAAGCCTTCCTGGAAAATATGTAACAGGATGAGACATTTGGAGGGAATGGAGGGAAAGTGGTTGACTCTACTGCCTATTGATTGGCCAGAGGGTGAGTGCTTCAGGCGATCAACAAACCTGTAATTTATGTCACATGTTCCACTCTTTACACTCAGATCATGGCAGATAGATATGTTTGTGTGcaagtgtgtctgtgtttgcatgagcgagagagagagacagaggatagcaAGAGTAAAATGATAGTAAAATAGgactgaaaaaagctgtaaaTCATATTTTAAAGTACTCTTTTTATCACACCATTTGATACATTTGTCTAATGATCATTTATGTATTTATATAATCATAAGTACTACACAACATTTTAATATCATACTTCGTAGATACAGTAGCATCAGGTAAATATGATCCAGTgcttaaaaaacaaaaacaagtaaACAAACACAGAGGAAATCAGGGTAAAGTAAGTGGATGCATCAATACCTCTCTTCCATGATTGGCTGGTTGGCTGCCACAGCTACCATAGTTAGGTACAGTATAAAAGAACCACAGTAGACTAGTATGCCATTCATTTAAAGATGATAATATAAGTACCAGCTATCCCCCCGCCCCCCGCCCCCtgcctgacacacaaacacacacacacacacacacacacacacacacacacacacacctgcgtaCACCAAATATCTAACTACATAACTAAGGAGAGACAGCCATGACGAAGTAGAGGTGTTGGTGTGGGGCAGCCCCTCCTGTCTGAGACTGCTGgtaaaggtcaggggtcaggtggtcaggtggggCAGAAGCAGAGAGGTCACAGCACTATGACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262946 lncRNA downstream 90000 17248716 ~ 17249318 (-) True G229901
TU262818 lncRNA downstream 148111 17190951 ~ 17191207 (-) True G229777
TU262750 lncRNA downstream 292999 17045463 ~ 17046319 (-) True G229709
TU262745 lncRNA downstream 293907 17043792 ~ 17045411 (-) False G229707
TU262746 lncRNA downstream 293907 17044695 ~ 17045411 (-) False G229707
TU263020 lncRNA upstream 7959 17349042 ~ 17349266 (-) True G229969
TU263027 lncRNA upstream 20834 17361917 ~ 17362226 (-) True G229976
TU263145 lncRNA upstream 117243 17458326 ~ 17458589 (-) True G230093
TU263522 lncRNA upstream 137804 17478887 ~ 17479168 (-) True G230442
TU263548 lncRNA upstream 186699 17527782 ~ 17578468 (-) True G230467
XM_036970572.1 mRNA downstream 150971 17075513 ~ 17188347 (-) True LOC110503762
XM_036970568.1 mRNA downstream 150972 17075513 ~ 17188346 (-) False LOC110503762
XM_036970569.1 mRNA downstream 150972 17075513 ~ 17188346 (-) False LOC110503762
XM_036970570.1 mRNA downstream 150972 17075513 ~ 17188346 (-) False LOC110503762
XM_036970575.1 mRNA downstream 150973 17075513 ~ 17188345 (-) False LOC110503762
XM_021592611.2 mRNA upstream 599435 17940518 ~ 17947436 (-) True LOC110511923
XM_021592596.2 mRNA upstream 616165 17957248 ~ 17964836 (-) False LOC110511898
XM_021592602.2 mRNA upstream 616165 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA upstream 616165 17957248 ~ 17964878 (-) True LOC110511898
XM_021592592.2 mRNA upstream 626926 17968009 ~ 17969851 (-) True LOC110511884
TU262748 other downstream 290974 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 489119 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 499479 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1548153 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1631053 15706234 ~ 15708265 (-) True G228098
TU263791 other upstream 634162 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 752673 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 752673 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 1258647 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1818217 19159300 ~ 19282138 (-) True LOC110511176

Expression Profile