RNA id: XM_036970580.1


Basic Information

Item Value
RNA id XM_036970580.1
length 3277
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110511898
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17957248 ~ 17964878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGATAACGAGCCAGtacagtgttcagtgtttttccTCTCTTCAGAAAATTGTTTGAGACAAGACTAGATCACTCTTCTAACAGTCCAAGAGAAACGTTTGTTTTTCCACAGCGGTTTAGGAGAGTGCCCATAAGAACATGGTAATCAACGCGTTTTTGAAGTAAAAGCTGAAGTCCAGCTGCATGAATATTATGGGCTCCAGTGCCGAAGAAGTCCGTGCTGGACTAATGGGCCATGTGTCCACTGTCCAACTGTTCACCTTGCACCGTGAGCTACTGGTCTCCCAGGTGAAGAGCACGCAGTGCATTCTGGATAACCTCCTACAAAGTGGCTTTCTGTGTTTTGAGGATACAGAAATCATCCAGCGCTCAGCCACCAAGACAGAACAGGTGCGTAAAATCCTGGAATTGGTCCAAAGCAAAGGGGAGCAGGCATGTGAATACTTCCTATATATTGTCCACAAAGTTTATGATGCATACATAGACCTCCAACCATGGCTTAAAGAGATCAACTACAAGCCACCAGACTTCATACGGGACATACCAGTGAAGAACACGGACCCTATTAGTAGGTACTGTGAGAAGCTGAGGCACGAGCTGAGCCGAGACACATTCTTCATTGCATCCTACGCCCAGCAAGAAGAAACCCTGCTGGAGGAGCTCTATACAGACACCCTGATGGAGCTCCTGAATGACCGCAATGAGAGCCTGGGCCACCTGGAGGGTCTGGAGCAGCTCCTGGGAGAGCAGGGTGTCTTTAACCCACAGGCAGAGACGGTGCTCATCACGGGGGATGCTGGGGTGGGCAAGTCCATCCTCCTCCAGAAGCTCCAGAGGCTGTGGTCCAATAGGGAGCTGGAACAGACAGACGCCATGTTCTTCTTCAAGTTCCGCTGTAGGATGTTCAGCACATTCAAGGAGACAGACGAGATCTCACTCAGGGACCTGCTTTTCAAATACAACTGCTACCCCGACCAAGATGCGGACAATGAGGTGTTCAGCTACATCCTCCGCTTCCCCGAAAAGGTTCTCTTTACATTTGACGGCTATGATGAGATCCAGGCTGATATGAACCCGGGGAACGTGCCTGAGGTGGTTTCTCCAGAGGAGAAGACTCACCCTCTTCTGCTGCTCATTAACCTGCTCTGTGGGAAGCTGCTCAGTGGTTCCCGGAAGGTCCTTACTGCTCGGACAGGCACTGAGGTCCAGAGCAGGGTGATCCGGAAGAGGGTGGCGCTGCGTGGGTTCTCTCCGGCCCACCTTCAGACCTACACCAACCTACACTTCAAAGAGCAGGAGCACAGGGACCTGGTCTCAGTCCAGCTGGATGCCAACCCCCACCTCTGTGGCCTCTgctccatccccctcttctgcTGGATCGTCTTCAAGAGCTTTAAACACCTGCACTCAGTCTACGATGACTTTGAGTTGCCAGAGGCTTGCGTGACCCTCACTAACATATTCCTTCTGCTTTCTGAAGTCTTCTTCAGCCGGGGGGCCGCTCCCCCACCGGGCCTCCTGACGAGAAACACCAGGTGCCCCGCTGATACCTTCAGGGCAGGGTTGAGGCCACTGACAGCCTTCTCCAAGCTGTCTCTGCTGGGCACGGAGAGAGGAGGCTTTGTGTTCGACAAGGAGGAGGTGACCTCCTGTGGCCTGACTGAGGACGACTTTCAGGTGGGTTTCCTCCGACCGGTCAGCCGCTACGATGCCTGTGGAAACCCTTCTACCTTTGAGTTCCTTCATCTCACCCTACAGTCCTTCTTGGCTGCATTCTCCCTGGTTCTGGATGAACAGGCCAGCGTAGGCAACATCCTCAAGTTCTTTACAGAGTGCAGCAGGAGGGACAACACATCTTGTTTATCGTGTGTCTTCCCCTGCATCGGTGGCTCCTCCAAACCCAGGGGAAAGGACCCGTTCAAGACCAATGAGCATCTCCAGTACGCCAACCTCTTCCTGTGTGGACTGCTGTCTAAGGCCAATGCCGGCCTGCTGGAGCACATGGTTCCTCCAGCACTGCTGAAGAGGAAGCGGGCGGTCCTCAAGTCCTACCTGTCCACCAGCGTGAGGTCCCACCTCCGCGGTCTGCCACTCCACAGCACAGAGCAGGAGGGCAGCAAGGTGCATGTCCTGCCCAACTTCCTGTGGATGCTGCGCTGCATCTTCGAGACAGGAAGTAAAGAGGTGGCCCAGCTGACTGCGAAGGGAATCACAGCTGACTACATCAAGCTGGGCTACTGTAATGTGTCCTCTGGCGACTGCAGTGCCCTCAACTTTGTGCTGCAGCACCGGCGGAAGAGGCTAGGGGTGGACatggacaacaacaacatcagTGACTATGGGGTCAAGCAGCTCAGGCCTTCATTCAGTAAAATGACCGTGGTGAGGTTGTGTGTCAATCAGATCTCAGACAGCAGCATTGAAGTACTGGCTGAGGAGCTTATCAAATACAGAGTGGTGGAGGTTTTGGGACTTTACAATAATCACATCACGGACATTGGAGCCAAGCTAATTGCTCATATCATTGAGGAATGTCCTAAGTTAAGAGTCGTCAAGGTTGGCAGCAACAAGTTCACCAGTGTGGGTGGCAGGTATCTGGCCAGTGCCATTCAGAAGAGCACATCTATCTTTGACGTGGGAATGTGGGAGAACAGCATTGGTGATGAAGGAGCAAGAGCATTCGCAGAGGTCCTGAGGAATCACCCAAGTCTTACCAACCTCTGtctctcagcCAATGGTATCACTTCAGAAGGTGGGCGGAGCTTGGCCAAAGCACTGAAAGACAATAGAAGGCTCCGAATTTTCTGGTTGGTGCAAAACGAGTTGTCAGATGATGTAGCACCAGACCTGGCAGAGCTGATCAGATCCAACACGGGTCTCTCTCACCTCTGGTTAATCAATAATCAGCTGACAGTGGATGGAATCAGACAGCTGTCAGAGGCTCTCTCCCACAACACATCACTCAAAGAGATCTGGTGCTCTGTCATCACTCACCCACAGTTTGAAAGGAAACTGTCTTTCTGAAGAGGAAGAGAAGCTGTTTGAGGCTGAGGGAAGGCTACACTTCCACTGAGGAGACAGAACTGAGctggagcatgtgtgtgtgtgtgcgcgcgcatgtacATTGGTCTTAGAGGGTCTTTGTTTGTTTTGCACATATTACATTGGAAATatttttacatactgtatatgtacagtgcattcggaaaatattcagaccccttgactttccacattttgttactttacagccttattctaaaactgattaaatagt

Function

GO: NA

KEGG:

id description
K08727 NOD1, CARD4; nucleotide-binding oligomerization domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263804 lncRNA downstream 5204 17951682 ~ 17952044 (-) True G230700
TU263801 lncRNA downstream 7592 17949429 ~ 17949656 (-) True G230697
TU263799 lncRNA downstream 18831 17934850 ~ 17938417 (-) True G230695
TU263789 lncRNA downstream 39933 17916923 ~ 17917315 (-) True G230689
TU263612 lncRNA downstream 239814 17714004 ~ 17717434 (-) True G230525
TU263811 lncRNA upstream 5549 17970427 ~ 17970665 (-) True G230707
TU263814 lncRNA upstream 7977 17972855 ~ 17973230 (-) True G230710
TU263792 lncRNA upstream 10367 17975245 ~ 17975905 (-) False LOC110505118
TU263794 lncRNA upstream 10367 17975245 ~ 17985544 (-) True LOC110505118
TU263824 lncRNA upstream 23762 17988640 ~ 17988873 (-) True G230720
XM_021592611.2 mRNA downstream 9812 17940518 ~ 17947436 (-) True LOC110511923
XM_036970572.1 mRNA downstream 768901 17075513 ~ 17188347 (-) True LOC110503762
XM_036970569.1 mRNA downstream 768902 17075513 ~ 17188346 (-) False LOC110503762
XM_021592592.2 mRNA upstream 3131 17968009 ~ 17969851 (-) True LOC110511884
LOC110505118 mRNA upstream 10282 17975160 ~ 17977653 (-) False LOC110505118
XM_036970588.1 mRNA upstream 68465 18033343 ~ 18048841 (-) True LOC110511860
XM_021592571.2 mRNA upstream 84868 18049746 ~ 18085029 (-) True LOC110511851
LOC110503747 mRNA upstream 128826 18093704 ~ 18154474 (-) False LOC110503747
TU262748 other downstream 908904 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1107049 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 1117409 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 2166083 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 2248983 15706234 ~ 15708265 (-) True G228098
TU263791 other upstream 10367 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 128878 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 128878 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 634852 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1194422 19159300 ~ 19282138 (-) True LOC110511176

Expression Profile