RNA id: LOC110503747


Basic Information

Item Value
RNA id LOC110503747
length 2465
RNA type mRNA
GC content 0.56
exon number 20
gene id LOC110503747
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18093704 ~ 18154474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCGCCACTTCTCAGCACGGCTGACATGGACGTGAATCACATGGCCATCCCCCAAAAGGTAACAGGCATGCAGATGGCAGCGTACAATGTGTCTCTCTGCCCGCGTGACAGTGGCCTGTTCAGACACCAGACGCAGGGTGGAGTGCTGGTGGCACCCCTGTATCATGGAGCAGTGGTAGAAGGATACGCTGGAGGAGGTGCTAAACCCAATGGATGCTATGGACTCCCAGCAGAGAACGCTACCATCGAGAGAGGCCTTGACCCGAAAGAATGGACGAAGAGTAATATCCAGTCCATGCGGGAGCAGCTCGACAGCCTAGGGCTCTGCTTTAATTGGGACAAGGAGGTGACCACCTGCCTGCCAGACTATTACAGGTGGACCCAGTAGCTGTTCGTCAAGCTCGGCCTATCAGAAAGAGgCGGTGGTGAACTGGGACCCTGTGGACCAGACGGTGTTGGCTGATGAGCAGGTGGATGACAGTGGATGCTCCTGGAGGTCTGGAGCTCTGGTGGAGCAGAAATTACTCAAGCAGTGGTTCATTAAGACCACCAACTACGCcaagcccctccTGGACGCCCTGGCGGAGCTGCCAGAGTGTTACGGGGTCAAGGCCATGCAGGCCAACTGGATTGGAGACTGCACCGGCTGCTACTTCAACTTCCACCTCAAGGTGAATGGGGAGGAGACGGGGGAGACTCTTGCAGGCTACACCTCCAGCCCAGAGGCAGTGTTTGGGGCTGCCTACCTGTCCATTGTCCCCTCCCACAGACTGCTGCATGGTACCAGCCCAGTCCGCTCAGCTCTGGAGAGagtcctgcagacaggcagagACTGCCTGACAGAGGTCACAGCTCACAACCTATTTACCAGTCAGGAACTTCCCCTGGTGATCTCCAGCAAGCAGGAGTTTGACGGTCATCTAGACACTGTCATCGGTATCGCCGACAGGAGTGTAGAGGATGCTTCTGTGGCCAGGGCTCTGGGTCTGAGCTGGAGCCCAGTCCTGAAGAGCCAGAAGGATGGAGGACACACACTGCTCAACTCTGGACACATagcaacacacactTTCACAGGCCTCAGCAGGGAGGAGGCATTTGACTCCATTACCCAGAAGGCCAGAGAGAAAAGTGGGTGGCCACCTGACCAGCACCAAGCTCAGGGATTGGCTGATTTCCCGGCAGCGGTACTGGGGCATGCCCATCCCCATGGTGCATTGTGGGTCTTGTGGTCCTGTGGCGGCCCCTGAGGAGCAACTTCCAGTCACCCTCCCCAAACTACTGTCCCTTACGGGGAAGGGGGCATCCCCTCTGGAGCACGCTGATGATTGGATCAGCTGTACCTGTCCCAGGTGTAAAGGGCCGGTCAGAAGGGAGACCGACACCATGGACATGTTTGTGGACTCATCCTGGTACTATTTCAGATACACTGACCCCCACAACCaagacaggCCTTTTGAGCGCTCCCTGTCAGACCACTGGCTTCCTGTGGACGTGTACATTGGGGGGGGAAGGATCATGCTGTTATGCACCTGTACTATGCACGCTTCCTCAGTCACTTCTGTAGGGATCAGGGCCTAGTGGGACACAGGGAGCCTTTCAAGAAGCTGCTGGTGCAGGGCCTCATCAAGGGCCAGACGTTTAGAGCTGCAGACAGAGGACAGTACCTGAAGAGAGACCATATGGACTTCACAGGTGAGGAGCCGGTGCTTGTGGGAAGTAAGGCCGGGCTGCAGGTGACATGGTAGAAGATGTCGAAACACAACGGCCTGGACCCTCAGCAGCAGTATGGCATCGACACTGTCCGTCTTTACATCCTCTACACTGCTCCCCCTGAACAGGTCATCCTCTGGGACGTCAAGAGTCACGTCACAGAGGACTTCCTCCTGAATGCAGCCATCTCTCGACTCATGGGAGTGGACACTCTCTGGCTGAGCCAGGTGAGGAACCCCCTGAGCCCTCTCCTTTCCCGCGGAGGAGACGTGCTGCAGCAGCTCCTCTCCCGCGGAGGAGACGAGCTGCAGCAACCTTGGCCCACCCCAGACCCTCTGTACCTGGAGACCCCTGATACCCTGGAGCTGGTTGTACGGATCAACAACAAGGTGTATGGGACGGTGTTGGTGCCTCAACAGGTGGCCCAGGATACGGAGCAGGTACGGGCGCTGGTTCTGGGGAGCAAGCTGGGACAGCATCTCCTAGGATACCGGACCATCAAGAAGGCCATTCTGTTCCATAGGACCGCCCTCATCAACTTCCTCATAGAGTAGCGACCACtcaatcctggatgctgattggtggACTGTCATGTCAATCAGAAGACCACTGCCACTCACAGACTTAAAGGCGGGGACATCATGTGAATGGAAGGATGAAAGACTAtttgtaaattaaaacaataagTAGTATCAAcagacatttttgtaaaaaaaactacaaaaaaaTATCTTTGTGAATAAAATGATATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264000 lncRNA downstream 13192 18079293 ~ 18080512 (-) False G230858
TU264001 lncRNA downstream 13346 18079293 ~ 18080358 (-) True G230858
TU263852 lncRNA downstream 73918 18019141 ~ 18019786 (-) True G230735
TU263849 lncRNA downstream 75268 18015483 ~ 18018436 (-) True G230734
TU263851 lncRNA downstream 78373 18014482 ~ 18015331 (-) False G230734
TU264223 lncRNA upstream 3779 18158253 ~ 18158589 (-) True G231065
TU264230 lncRNA upstream 21233 18175707 ~ 18176072 (-) True G231072
TU264231 lncRNA upstream 22971 18177445 ~ 18177681 (-) True G231073
TU264245 lncRNA upstream 39951 18194425 ~ 18197709 (-) True G231080
TU264248 lncRNA upstream 43815 18198289 ~ 18199925 (-) True G231081
XM_021592571.2 mRNA downstream 8675 18049746 ~ 18085029 (-) True LOC110511851
XM_036970588.1 mRNA downstream 44863 18033343 ~ 18048841 (-) True LOC110511860
LOC110505118 mRNA downstream 116051 17975160 ~ 17977653 (-) False LOC110505118
XM_021592592.2 mRNA downstream 123853 17968009 ~ 17969851 (-) True LOC110511884
XM_021592602.2 mRNA downstream 128826 17957248 ~ 17964878 (-) False LOC110511898
XM_021592560.2 mRNA upstream 26016 18180490 ~ 18182783 (-) True LOC110511808
XM_021592549.2 mRNA upstream 45584 18200058 ~ 18206177 (-) False LOC110511774
XM_036970616.1 mRNA upstream 45584 18200058 ~ 18207022 (-) True LOC110511774
XM_036970651.1 mRNA upstream 55547 18210021 ~ 18219386 (-) False zufsp
XM_021592521.2 mRNA upstream 55547 18210021 ~ 18219577 (-) False zufsp
TU263791 other downstream 115795 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1045360 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1243505 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 1253865 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 2302539 15787622 ~ 15791165 (-) False G228191
TU264859 other upstream 445256 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1004826 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 1387628 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 1493612 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1601730 19756204 ~ 19756618 (-) True G233052

Expression Profile