RNA id: XM_021592560.2


Basic Information

Item Value
RNA id XM_021592560.2
length 1425
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110511808
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18180490 ~ 18182783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGTGTTTCGAAAAAGAGCGCGTGGAACAGGAAAAACAACACTTGCTAGCAGCTACTCAGCTAGATAACAAACAAAAATGTTGCCTAACATAAAATCATTGAGAATGTTGCTTAACAGGCGATTAAAAGCGGCTGTCGACGAGCTATTCGGGGCAGTTGAAACAACGATAGCAGAGTACCAGCAAGAATTATGCCGTTCAAAAGAGGAGAAAGACCGAACGATAGCGGAGTACCAGGAAAAAATGTCCCGTTCGGAAGAAGAGAACGCCCGGCTACAGAGGCTGCTGGATGTCGTTCTTAAACCAGAAGTAAAGTTGCAGAGACTAGAAGACCTCCAGcagctcactctctccatctctgaaaAAGTTTCCCCTGAGCAGCAGGATTGTAGTCCTGGTCTGGGGCAGGAGGAACCTTCTCAGATTAAAGTGGAACAGGAGGAGCTATGGGTCATCAGTCAGGGACAAGAGCAGCTTCAAGCGATGGATTATGATACTGATGATACTGATGATTCTGCTGATACAGAAGCCTTCATATCTACTGCCAGAGTAAAAGGTGACTGTAATCAGAACCCAAGTCAGTCCTCACATCTTTACCAAGTTTTAACCCAACGTGAAGAAAACACAGACAGGGATGAGCTACCCAGCACCACAATGCAAATTGAACAGATTAAAACAGAAAATGTCAGTGACAGTGACTCTCAGCCCCCATCTGCAGTCAATTCAGACTGGTCTGAAACTCAGATTGAGAGTGGTGATAGTGTTGATTGGATGGAGAGTGAAGGACCTCCACCCAAGTCAAAGAGAACACAGACAGAAGTTGGACCAAGAGTCTGTACTAAAGTCAGAGAATCCACAGTGTTGTCCCATTTGAAATCCCCTATCCCCAGTAATGCGTAATTGAGTCTGTAGAAAGTTTGAAAGAACATCTACATTTTCATGTTGCAAGTACAGGATCACTTTCTTGTTACATCTGTGGTATATGCTTCACAGAGGATGAGGAGGTTTTGCTGGAAGAGCATATGAGCAATCACAAACTGTATCGCTGTCTTGGGTGTAAAGAACGTTTTCGATACTCGCCAGGGTCTGACATTGCATAAGAAGACACACCAGGACTCTTGATCAGGATTGAAAATTGAAGACCGCCCCGACCTGGGCCTATGACCTGCAGCCTGAGCCTTTACAAGCagtcattttttattttgaaattGTAAAAACAATGTGAATGTGAGGGAGGAGTAGCCTATATTTTCGTGATCAAACTTGATTAAAACACTACAGCAGTTTTTGCTGAAGAAATTACTCTGGTAAAATGTTACAGTTCCATATCCTAGTAAAGGAAGCCTGAGTGAGGCCCAATGCAGTCTGTGTATCCTGAAAAGTTGTTTTTATATATCAAATAAACTATTGAATGGAGAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264231 lncRNA downstream 2809 18177445 ~ 18177681 (-) True G231073
TU264230 lncRNA downstream 4418 18175707 ~ 18176072 (-) True G231072
TU264223 lncRNA downstream 21901 18158253 ~ 18158589 (-) True G231065
TU263979 lncRNA downstream 83799 18093756 ~ 18096691 (-) False LOC110503747
TU264000 lncRNA downstream 99978 18079293 ~ 18080512 (-) False G230858
TU264245 lncRNA upstream 11642 18194425 ~ 18197709 (-) True G231080
TU264248 lncRNA upstream 15506 18198289 ~ 18199925 (-) True G231081
TU264260 lncRNA upstream 25291 18208074 ~ 18208275 (-) True G231091
TU264241 lncRNA upstream 45201 18227984 ~ 18229371 (-) True G231079
TU264300 lncRNA upstream 109796 18292579 ~ 18292797 (-) True G231126
LOC110503747 mRNA downstream 26016 18093704 ~ 18154474 (-) False LOC110503747
XM_021592571.2 mRNA downstream 95461 18049746 ~ 18085029 (-) True LOC110511851
XM_036970588.1 mRNA downstream 131649 18033343 ~ 18048841 (-) True LOC110511860
LOC110505118 mRNA downstream 202837 17975160 ~ 17977653 (-) False LOC110505118
XM_021592592.2 mRNA downstream 210639 17968009 ~ 17969851 (-) True LOC110511884
XM_021592549.2 mRNA upstream 17275 18200058 ~ 18206177 (-) False LOC110511774
XM_036970616.1 mRNA upstream 17275 18200058 ~ 18207022 (-) True LOC110511774
XM_036970651.1 mRNA upstream 27238 18210021 ~ 18219386 (-) False zufsp
XM_021592521.2 mRNA upstream 27238 18210021 ~ 18219577 (-) False zufsp
XM_036970648.1 mRNA upstream 27238 18210021 ~ 18219579 (-) False zufsp
TU263980 other downstream 49436 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 50404 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 202581 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1132146 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1330291 16849972 ~ 16850199 (-) True G229380
TU264859 other upstream 416947 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 976517 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 1359319 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 1465303 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1573421 19756204 ~ 19756618 (-) True G233052

Expression Profile