RNA id: XM_036970648.1


Basic Information

Item Value
RNA id XM_036970648.1
length 2318
RNA type mRNA
GC content 0.53
exon number 12
gene id zufsp
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18210021 ~ 18219582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAACTGAAGGAGGAGAAGCCAACTGGGCCAGTAAAGTCAAGTTGTTTGCTAGCATTGCTAAGATGGCATATGAATGAAAAGTGAAACAGAAACACATTTATTTTGAAAGTAGTCACATAAGTCAAGCATTAGTAGGGCACATCGTCCATATTTTTGAAATCGTGTCCAGCTGAGCACCAGAAACAATTGGCCATGCTGACGTGTGAGTTCTGTGGCGAGGAATTGATGTTGGAGGAGGACATGAAGACCCATCTCCTCCTGAGCCACCTGGAGAATGACATGGGCTGCACCCTCTGTTCCTGGTCCGGAGTCACCTACGACGAACTCAGCTTCCACATCAATACCACACACAAAGAGAAACAGGACCATGACGGAAGAGGAGCAGAGGGTAGAGGTGGTCACAGTCTTGTCAGGCCCAGCTCAAGTCCTACTCCCACTACCACCATAGTGGACAATCACTGCAAACAAGACATTGGTTTGTCTAGGTCTGAGGGTTCTGAAGGAGGAGTAGACAATGGGAATAGGTTTGACACCATTGGAGGAGGGGTCTCACCCAGGACATCCAATAGCACACTGGAGTCTAAGGAGCAAATTACTGAAGCTGGGGGGGAGTTCGGTGGAGGGCGAGCAGTGGCCATTGTTGTATCCACCTCTTCAGTGTCTACAGGCTTTCTGAGATCAGCTCAGGACTCCAGTAGGCCTACTAGCAGACACTGTAATGCTGAGGAGTCTGTGGGAGTGGGATCCGCAGAGCACACCAAAGTCAAACAGAAGCGTTTCTCCTCCCCACTTAAAGGGAAGCGGTTTTCCTGTCCAATGTGTGCTCTGGTCTGCACCGACGCCTTCATCCTACAGGAACATGTTGAATTGCACTTGCTAGAAGAGAGCCCAGCTGAAGAGGTTGTCCTGGGGGCCACATCATCAACCGAGGCAGCATCATCCAGCAACAGCTCAAGTTCGTCTCATTCCTTTCATCATAGGAACAAATATAGTTCAACCAAACAAAGGAAGAAGCCCTGCCTATGGCAGATCCACAGAGGTGGGAAGAGTTATGAGTGTCCCCTGTGTTCTGTGGTGTGTGGAGACTGCTACTCCCTACAGGAACATGTGGAGCTGCATCTTGACTATGGCACAGCCACTAGTGCAGtgagcCCTGGCTCAGACCTGAGGCTGGCCAGGCGgctgcaggaggaggagaagcagaggaggaaggagCAAGAGGCCAAGCAGGAGGCAGAGGAGTTCAAGAAGCTGCAGaggcAGTTTGGTGTGGACGGGAGGGGGGGCTACCGCAAACAGATGGAGAGGACCATGGAGAAAGCCGTGTCTCGAGGTGTGATGGTGCCTGCTCACTTCCACAAcaagagagatgagatgatggaGGCTCTGGCCTCAGGGGTCGACGATGGCAGGACCAGAACGCAGGGTGTGCTGGGTGCTCTGTATGTTTACTACCAGAGGGAGGCCAGAGACTGTGTCCACGTGTGGCTGAGTGCTGACACAGACCACTACTGCTCATCAGAGGGGGATAAGGGCTGGGGATGTGGCTACAGAAACTTCCAGATGCTCCTGTCTTCTCTGCAAAGAATGGAGCCCTACACTACCTGTCTCTcagagGGGTCAGTACCCAGCATCCCACAGGTGCAGGTGTTGATAGAGGGGGCGTGGCGGGAGGGGTTAGACCCACAGGGCGCCACCCACTTTAACCAGCGACTACAGGGCACACGGGCCTGGATAGGAGCTACAGAGATCTACGCTCTCTGCACCTCCCTCAGAGTCAGTGCCCGTGTTCTAGACTTCCACCAGCCCACGGGCCCAGGGGACACCCACCCCCGCCTCTTTGACTGGGTGAAGCAGTACTTCTCTCAGACTGCCACCAGAGGCGCCAGACTACCGCCCCGGGTGGTGCAGACCACACAGCCGCCCCTCTACCTCCAGCACCAAGGCCATAGCCGCTCAATAGTAGGAGTGGAACAGAAGAAGAATGGCAGCCTGTGCCTGTTGCTCCTGGACCCTGGCTGTACACCAGGAGATGTGAGGAAACTGCTGAGCCAAGATGGCTCCACTGTTAGCACAGCTGTCTGCCGCATGAGGAAGTTCCCTGGCAACCTGAAACATAGGCAGTACCAGGTGGTGGCTGTAGAGGGCGTGCTCTCCCCCGTGGAGAAACAGaCCCGCATTCTCAACTCAAGAACACTGCAAGCCGAGAGGATCCCTTGATGCTGGAATGCAGTTTTGTAAATGTATAACTGCCAAAAACAGTTCATGTTTAATTTTCTTGGACATTTTATTAAGGTAATAAATTATGTATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264260 lncRNA downstream 1746 18208074 ~ 18208275 (-) True G231091
TU264248 lncRNA downstream 10096 18198289 ~ 18199925 (-) True G231081
TU264245 lncRNA downstream 12312 18194425 ~ 18197709 (-) True G231080
TU264231 lncRNA downstream 32340 18177445 ~ 18177681 (-) True G231073
TU264230 lncRNA downstream 33949 18175707 ~ 18176072 (-) True G231072
TU264241 lncRNA upstream 8405 18227984 ~ 18229371 (-) True G231079
TU264300 lncRNA upstream 73000 18292579 ~ 18292797 (-) True G231126
TU264301 lncRNA upstream 73563 18293142 ~ 18293427 (-) True G231127
TU264302 lncRNA upstream 73896 18293475 ~ 18293701 (-) True G231128
TU264303 lncRNA upstream 75695 18295274 ~ 18295495 (-) True G231129
XM_036970616.1 mRNA downstream 2999 18200058 ~ 18207022 (-) True LOC110511774
XM_021592549.2 mRNA downstream 3844 18200058 ~ 18206177 (-) False LOC110511774
XM_021592560.2 mRNA downstream 27238 18180490 ~ 18182783 (-) True LOC110511808
LOC110503747 mRNA downstream 55547 18093704 ~ 18154474 (-) False LOC110503747
XM_021592571.2 mRNA downstream 124992 18049746 ~ 18085029 (-) True LOC110511851
XM_021592518.2 mRNA upstream 18165 18237744 ~ 18248134 (-) True LOC110511716
XM_021592506.2 mRNA upstream 59379 18278958 ~ 18285197 (-) True LOC110511708
XM_021582235.2 mRNA upstream 71070 18290649 ~ 18292476 (-) True LOC110503742
XM_021592497.2 mRNA upstream 79160 18298739 ~ 18311500 (-) True LOC110511684
XM_021592464.2 mRNA upstream 133942 18353521 ~ 18359012 (-) False LOC110511626
TU263980 other downstream 78967 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 79935 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 232112 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1161677 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1359822 16849972 ~ 16850199 (-) True G229380
TU264859 other upstream 380151 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 939721 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 1322523 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 1428507 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1536625 19756204 ~ 19756618 (-) True G233052

Expression Profile