LOC110511716 (LOC106579594)


Basic Information

Item Value
gene id LOC110511716
gene name LOC106579594
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18237744 ~ 18248134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592518.2
GCtagaggagaaaacagagtgagagagagagagagagagagagagagagagagagagagagaaagagagagagagagagagaggagacagacagacacagtcggtgaaggttagagggagtgtgagagaaacTGCAAGGAGAGACACCAACATTGAGAATTGGACAGTATCAACAGAGAGGTGATGGAACCCATGGGTGATGTTCTCCACCTGTTAGTCATCCTGTCCTTGTTGGAGAAGGGCAATGCCAAAGTGGGACACTTCAAAGCAGCAGGAGCTACAGCACCAGGAGATATCATCATTGGAGGGCTGTTTCCCATCCATGAGGGAGTAGAGGAATCccccaacatctcagcaccccatGAACCACATTGTGTCAGgttcAACATGGTCGGGTTCACCCAGGCATTGGCTATGATCCACGCTGTAGAGTCGGCCAACAGATCCCCTGTCCTGACTACTCTAGGGATCTCTCTTGGGTACCGTATCCACGACTCCTGCTCTGATGTCACCACCGCTCTGAGGGCCTCAGCTGACTTCACACAGGATCCAAACACAGGAGCCAACacctccacctgttccccaccCATCATGGCCGTCATTGGGGCCTCTTCCTCTGAGATTTCCATCGCTGTTGCCCGGCAACTCAACCTGGAGCTCATTCCTCAGATCAGTTACGCCTCCACTGCCATCATCCTGAGTGACAAGATCCGTTTCCCTGCATTCCTGAGGACCGTACCTAGCGACCTGTACCAGACACGGGCCATGGTCCAGTTGCTTAGCGACAGCAAATGGACCTGGGTCGGCGTGGTCACAACGGATGGAGACTACGGCCGCTCTGCCCTGGACAGCTTCGTCTCCCAGGCAACCGCCTCAGGGATTTGTGTGGCCTTCAAAGAGATCCTCCCTAACTCGCTAACCAGTCCTGACGGCGAATCAGCATTCAGACAAGCCACCGCCACCCTCCTCGGGAACCCCAATGTCAAGGTGGTGGTATCGTTCGCCAGGCCTATTCACATGATGTACCTGTACCAGGAGTTGAGGGTTTGGGGGTCGCTTCTGGGGGAGAAGGTGTGGGTGGCCAGTGATAGCTGGTCCTCATCCAAAGAGGTCCTGGGAGAGATGGACCTCCTAGATATCGGCCATGTGGTGGGCTTCTCCTTCAAAAGAGGGAACCTTGCTCCTTTCCATCGCTACCTGATGAATCTGATTAACATCAATGATGTCATAGGAAACAACTCCTTCCTAAAGGAGTTCTACTCACTGCTAAACGAGTCGGGAGATCCCGGGTTTAGGTCCTCCTTCACAGTCCCAGCAGAGATCCTGCTAAACAACAGCGATGCGAAAGTGGTCTTCAGTGTGGAGATGGCTGTCAGTGCCATCGCCCATGCAGTGGCTGATATCTGCAGCAGAAAGGACTGCAAGACACCAGGCACGGTCCAACCCTGGCAGGTGCTTGAAACCCTGAGGGGCAGTCGCTTTGAGCTGGAGGGGAAAAGCTACAGTTTTGACCAGAAAGGAGACATCAACCTGGGCTATGATGTAACCTTGTGGAGGTCTGTGAGAGGGGTCATCAACATCCATGACGTTGTAGCTGTGTACCATCCAATCAACAACAGCTTCAGCTATACCAGCGGAAACACCAACAATCTCACTGACCtgaggGATGTGGTGTCTGTTTGCTCACCTAGCTGTGAACCTGGGAAGTTCAAGAAGTTTGCTCAGGGTCAGCACACCTGCTGCTATGAATGCATCAACTGCACTGAGAACCACTACTCCAACAACCCTGACATGGACCAGTGTCTCTCTTGtgacacaaagagagagtggTCCCTGGAAGGGAGCTCTGGGTGTACCCACAAGACCCTGGAGTTCTTCTCCTGGCAGGATGGATTTGCGGAGGTGCTGCTGGCGCTGGCGGCCCTGGGCATCGTCCTGGTTCTCCTGGTGGGGGCGCTCTTCCTACACTACCACCAGACCCCCGTTGTGAAGGCTGCCGGGGGGCCTCTCTCCCAGATCATCCTGCTCTCTCTAGTGGGAAGTTTTGCTAGTGCTGTGTTCTTTGTAGGTCAACCCAGCAGCCTACAGTGTAAGGTGCGTCAGGTGCTGTTTGGCCTCAGCTTCACCCTGTGTGTTTCCTGCATCTTGGTCAAGTCCCTGAAGATCCTGCTGGCCTTCCAGCTCAACCCTGACCGGAAGGATGTTCTCCGCCGCCTCTACCAACCGTATGCCATCATCTGTCTCTGCGTGGCCCTACAGGTCCTCACCTGCACCCTGTGGCTGGTCCTGCAGAGCCCCCGGGAGAAGGCCACAGTCTTCACCACCACTGTGTTGGCCGAGTGTGACGAAGGCTCCCAAGTGGCGTTTGGTGTGATGCTGTGCTACATCGCTGTCCTGGCGCTCGTATGTTTTGCCTGCGCGTTTAAAGGCCGCAAGCTGCCACAGAAGTACAACGAGGCCAGGTTCATCACCTTCAGCATGCTCCTCTACCTGATGTCCTGGCTGATATTTGTGCCCGTCTATGTGACCACCTCTGGGAAGTACCTGCCAGCAGTGGAGATGGTGGTCATCCTCATCTCCAACTATGGCATCCTCAGCTGTCATTTCTTCCCCAAGTGCTACGTCATCCTCTTCAAGAAGGAGCACAACACCAAGAGTGCCTTCATGAAGAACGTGTATGACTATTCCAGAAAGGGCATTACTGACTCTAGCTCTGTCTCTGAGATTTCAGTCTCTCAGACAGAAGGGTATCGCATCAGTCACCCTTACTCCATCAGTTCACCTTCCTTCTTCATGTCTCCTCCACCAGTAGAACCCACAGCACCTCAGAATTACTGGTCCGTTGACCAGAACATTCAGAGCATTGACACTGTAACCCATTGCACCGTCGTAGACCATGGAGTGTTTGTCACAGGTCAGCTGACTCGACCACACCATCTGAGGAGAAGCATGAGCCTATGAGTGGAGTGGAGCAGTGTCTGGAACTTTTACATCTTACAGTACATCacacagtgtgtctctgtgatcctATCTTTGGTTTGACTGTTCCCATTTTGCTTAGTCTACTGGTATGTTTTTTGCCCAAATTGGTTGTTGACTTTTACATTCAAGGCAATttaggtaacactttatttgacacTGATATAGACATGATAAACAGGCATAAATTCTGTCATACAGTGTCATGTTTatccaggggcgcaactttggttttagaaatTGTGGGGACATAATTTACACTACCGTAaggacatcaaaatgatgaaataacacatggaatcatgtagtaacccaaaaagtgttaaa

Function

NR:

description
G-protein coupled receptor family C group 6 member A-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04622 GPRC6A; G protein-coupled receptor family C group 6 member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592518.2 True 3306 mRNA 0.52 8 18237744 18248134

Neighbor

gene id symbol gene type direction distance location
zufsp cf113 coding downstream 18162 18210021 ~ 18219582 (-)
LOC110511774 LOC106579313 coding downstream 30722 18200058 ~ 18207022 (-)
LOC110511808 LOC106579331 coding downstream 54961 18180490 ~ 18182783 (-)
LOC110503747 lars2 coding downstream 83270 18093704 ~ 18154474 (-)
LOC110511851 LOC106579350 coding downstream 152715 18049746 ~ 18085029 (-)
LOC110511708 LOC106579301 coding upstream 30824 18278958 ~ 18285197 (-)
LOC110503742 cndp1 coding upstream 42515 18290649 ~ 18292476 (-)
LOC110511684 LOC106605538 coding upstream 50605 18298739 ~ 18311500 (-)
LOC110511626 LOC106579251 coding upstream 105387 18353521 ~ 18359014 (-)
LOC110503735 LOC106605534 coding upstream 356625 18604759 ~ 18623150 (-)
G231079 NA non-coding downstream 8373 18227984 ~ 18229371 (-)
G231091 NA non-coding downstream 29469 18208074 ~ 18208275 (-)
G231081 NA non-coding downstream 37819 18198289 ~ 18199925 (-)
G231080 LOC106579327 non-coding downstream 40035 18194425 ~ 18197709 (-)
G231073 NA non-coding downstream 60063 18177445 ~ 18177681 (-)
G231126 NA non-coding upstream 44445 18292579 ~ 18292797 (-)
G231127 NA non-coding upstream 45008 18293142 ~ 18293427 (-)
G231128 NA non-coding upstream 45341 18293475 ~ 18293701 (-)
G231129 NA non-coding upstream 47140 18295274 ~ 18295495 (-)
G231131 NA non-coding upstream 58822 18306956 ~ 18307258 (-)
LOC110505118 LOC106579600 other downstream 259835 17975160 ~ 17985544 (-)
G229707 NA other downstream 1189400 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1387545 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 1397905 16839389 ~ 16839839 (-)
G231652 rn146 other upstream 351596 18599730 ~ 18601875 (-)
LOC110511176 LOC106579058 other upstream 911166 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 1293968 19416054 ~ 19652601 (-)
G232980 NA other upstream 1399952 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 1508070 19756204 ~ 19757908 (-)

Expression


Co-expression Network