LOC110503735 (LOC106605534)


Basic Information

Item Value
gene id LOC110503735
gene name LOC106605534
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18604759 ~ 18623150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503735
ATGACCGAAGAGCAGAAGTCATATCACCAAGTTACTCAGAGCCTGTGTAAAGGCAAGCCCCTGGATTTTGTGTTCATCATCGACAGCTCCCGCAGCGTGCGTCCCAGCGACTACGAAAAGGTCAAGATCTTCATCACCAACATCGAGGCCTTCCTGGACGTGGGGCCGGAGGCGACGCGCGTCGGGCTGCTGCAGTACGGCAGCGTGGTGCAGAACGAGTTCTCCCTCAACACCTACAGCAGCAAGTGTGATCACCTCTGTGTGAGCACCCCAGCCTCCTACATGTGCCGGTGCAGAAGGGGTTACACCCTTAACTCTGATGGCAAGACCTGCCGCATGGAAGACCCATGTGATGTGGTGGACCATGGCTGTGCCCACATCTGTGCCAACATGCCAGGGGTACTCGGCTACGAGTGTCGCTGCCGGCTTGGGTATGAACTCAACGAGGACGAGAGCACGTGCCGAAtgaccTGGGGAACCATGGCTGTCAGCATGACTGTGTCAGCTCTCCTGAGTCCTACGTCTGTAGATGCACGAGGGGCTATGTTCTCAACCGCGATGGCAAGACCTGCAGCATTGATTTGGGGTGTCGTGGCGACTCAACACTATTTGTCTCTAATACGGCAGTGTTCAGATGGAGTGATGGATCTGGTATTTGTAATTGATGGTTCTAAGAGCCTGGGGCCGGCCAACTTTGACCTTGCAAGCAGTTTGTGAACAGCATTGTGTACTCTCTGGACGTGTCCGGCACGGGCACCCACGTGGGGCTGCTGCAGTACTCCAGTAAGGTCCGCACAGAGTTCATCCTGGGTCAGTATACCTCAGGCCGGGACATCAACAGGGCCTGTGTCGCGGATGCAGTACATGGGCAGAGGATCCATGACGGGCGCTGCCCTGCGTCACATGTTTGAGTACAGCTTCTCTGCCAAGGAGGGGGCCAGGCCCGACATGCCACGGATCAGCATCGTGTTCACCGACGGACGATCCCAGGATGATGTGTCGAAATGGGCCACTAAGGCAAAGGATGCCGGTACGGTTTCTTACATCGTGTTTGCTGAACTTGTTCTGATTGCAGAGCCATTTAAAGAGCCTTTAATAGAGTACCATCTTCTCTTAAAGGAGTCATTCATCCACTTCCTTCTGAACTGCTTCCCCGCCCCCAGGTATCACGATATATGCACTTGGTGTTGGTAAAGCCATCGAAGAGGAGCTCAGGGAAATTGCTTCCGAGCCAGATGATAAGCATTTGTACTATGCTGAAGATTTTAGCAACATGGGAGAAATTACAGACAAATTGAAGTCACGGATATGTAAAGGTACCCAATGAATAAAACACACTCTAAAATAACTTTCTTATTAAAGATCCATCACAGCTACACATTATTCATTATTTCTCACACTTTTCCTGCAGTGCACAAATCGTCTCATCTTGAATAAATTATCAAATCTATAAATACAAATACTAAATCAAAAAATGCCCCTGACCCCATCTAAAGTCTTAAAACTAATCCGATTGTTTATGGTGGTGCTTATAGACTTCCATATAATTttttatacttaagcaataatccctgaaggggtg
>TU264871
GCCAACTCCTCTGACTGTATGTGCGTTTTCATGACGATTACAGTCAGAGGAGTTGGCTAAAGCACACACAGATCTGAAAACAGGCAAATGAGGATTGTATCCTCGACTCAAAATATTTATTTGTTCTGCCCATgatcactgttcgttgttggatTGCCTTTACAAACAACATCCTTTCTGATTAGGGTGCACTGAGAGATGTATGAAGTGTTGCTATGCGCGGAAGGATCCCAAAGATTTAAAGCACTTGCCTGTAATCTAACAGATGACCGAAGAGCAGAAGTCATATCACCAAGTTACTCGTACGTTATAGTTTAGTGTGTATAGAAAACTGTCATTATCCTGAATTATTACAACAGGACTGTGTTGAGTtgacatttctttatttttaaggTTGAGTTATATGACTTGTACATTTGATCTTATATCTGTGTTGTTTCGAATAAAGGAAAAAGTGGTGGTCTTGTTTTTTGAATTAAGTCAATGTAAGCAGACTGGGTGCAGTTATTGGCAAGCTGTTCCCCAGACGGGAGATGTCCTCTGAGGAATCCGTCACATTTAACCGTCTGCTGCTGCAGCATAAAAATACATAAGTTATATTTATTTGTCtattaaaaacacatttaattgATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503735 False 1582 mRNA 0.38 6 18604759 18610876
TU264871 True 634 lncRNA 0.39 2 18610508 18623150

Neighbor

gene id symbol gene type direction distance location
LOC110511626 LOC106579251 coding downstream 245745 18353521 ~ 18359014 (-)
LOC110511684 LOC106605538 coding downstream 293259 18298739 ~ 18311500 (-)
LOC110503742 cndp1 coding downstream 312283 18290649 ~ 18292476 (-)
LOC110511708 LOC106579301 coding downstream 319562 18278958 ~ 18285197 (-)
LOC110511716 LOC106579594 coding downstream 356625 18237744 ~ 18248134 (-)
laptm4b LOC106605533 coding upstream 1216 18612092 ~ 18624427 (-)
LOC110511506 lyric coding upstream 13705 18624581 ~ 18633247 (-)
LOC110511375 NA coding upstream 22523 18633399 ~ 18676640 (-)
LOC110511352 LOC106605528 coding upstream 86461 18697337 ~ 18706474 (-)
LOC110511312 LOC106605543 coding upstream 183109 18793985 ~ 18797369 (-)
G231649 NA non-coding downstream 9263 18594986 ~ 18595496 (-)
G231648 NA non-coding downstream 11477 18593036 ~ 18593282 (-)
G231646 NA non-coding downstream 13080 18591471 ~ 18591679 (-)
G231621 NA non-coding downstream 62388 18542022 ~ 18542371 (-)
G231617 NA non-coding downstream 69261 18535270 ~ 18535498 (-)
G231677 NA non-coding upstream 70161 18681037 ~ 18681288 (-)
G231679 NA non-coding upstream 73236 18684112 ~ 18684718 (-)
G231686 NA non-coding upstream 99216 18710092 ~ 18710295 (-)
G231753 NA non-coding upstream 203935 18814811 ~ 18815043 (-)
G231755 NA non-coding upstream 205495 18816371 ~ 18816870 (-)
G231652 rn146 other downstream 2884 18599730 ~ 18601875 (-)
LOC110503747 lars2 other downstream 473705 18093704 ~ 18154474 (-)
LOC110505118 LOC106579600 other downstream 626850 17975160 ~ 17985544 (-)
G229707 NA other downstream 1556415 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1754560 16849972 ~ 16850199 (-)
LOC110511176 LOC106579058 other upstream 548424 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 931226 19416054 ~ 19652601 (-)
G232980 NA other upstream 1037210 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 1145328 19756204 ~ 19757908 (-)
G233513 LOC106561082 other upstream 1940907 20551783 ~ 20551997 (-)
LOC110511207 oxr1 coding upstream 203729 18826879 ~ 19024152 (-)

Expression


Co-expression Network