LOC110511708 (LOC106579301)


Basic Information

Item Value
gene id LOC110511708
gene name LOC106579301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18278958 ~ 18285197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592506.2
AAGATACTATCAGGTCACTGTGTCAGTCTGCTAGATGAGcttacagagtgagagagagagagagagagagagagagagagagagagagagagagagagactgacagacagacagacagtcgggGAGGGAGcgggagtgtgtgagagaaactGCAACGAGAGACACCAAAATTGAGAATTGGACAGTACACCAGAGAAAAATGGCACCCATGGGTGATGTTCTCCACCTGTTAGTCATCCTGTCCTTGTTGGAGAAGGGCAATGCCAAAGTGGGAGACTTCAAAGCAGCAGGAGCCACAGCACCAGGAGATATCATCATTGGAGGGCTGTTTCCCATCCATGAGGGAGTAGAGGAATCccccaacatctcagcaccccatGAACCACAGTGTGCCAGgttcAACATGGACGGGTTCACCCAGGCATTGGCTATGATCCACGCTGTAGAGTCGGCCAACAGATCCCCTGTCCTGACTACACTAGGGATCTCTCTGGGGTACCGTATCCACGACTCCTGCTCTGATGTCACCACCGCTCTGAGGGCCTCAGCTGACTTCACACAGGATCCCACCACGGACTGTGGGGGAGGGGCCAACACCTCTAACTCTTCCCCGCCAATAATGGCCGTCATAGGGGCCTCTTCCTCTGAGATTTCCATCTCCGTTGCTCGGCAACTCAACCTAAAGCTCATCCCTCAAATCAGTTACGCCTCCACTGCCATCATCCTGAGTGACAAGAACCGTTTCCCTGCTTTCCTGAGGACCGTACCTAGCGACGTGTACCAGACACAGGCCATGGTCCAGTTGCTTAGCGACAGCAAATGGACCTGGGTGGGCGTGGTCACAACGGATGGAGACTACGGCCGCTCTGCCTTGGACAGCTTCGTCTCCCAGGCAACCGCCTCAGGGATCTGTGTGGCCTTCAAGGAGATCCTCCCTAATTCACTAACGAGTCCTGACAGCGAATCAGCAATCAGCCAAGCCGCCGCCACCCTCCTCAGGAACCCCAATGTCAAGGTGGTGGTGTCATTCGCCAAGCCTACTCAGATGATGTACCTATACCAGAAGCTGAGGAGTCTGGGGTCGGGGCTGGGGGAGAGGGTATGGGTGGCCAGTGACAGCTGGTCCTCGTCCAAGGAGGTCCTGGGAGAAATGGACCTCCCAGATATTGGCAATGTGGTGGGCTTCTCCTTCAAAAGAGGCAACCTGGCTCCTTTCCATCGCTACCTGATGAACCTGAGTGACAATGATGTCATAGGAAACAACTCCTTCCTAAAGGAGTTCTACTCACTGCCAAACAGGTCGGAAAACTCTGGGGTTTTGTCCTCCTCCACAGTCCCAGCAGAGATCCTGATAAACAACAGCCATGTGAACTTAGTCTTCAATGTGGAGATGGCTGTCAGTGCCATCGCCCATGCAGTGGCTGATATCTGCAGCAAAAAGGACTGCAAGACACCAGGCACGGTCCAACCCTGGCAGGTGCTTGGAGCCCTGAAGGACAGTTGCTTTGAGCTGGAGGGGAAAAGCTACAGTTTTGACCAGAAAGGAGACATCAACCTGGGCTATGATGTAACCTTGTGGAGGTCTGTGAGAGGGGTCATCAACGTCCATGACGTTGCAGCTGAGTACCATCCAATCAACAACAGCTTCAGCTACACCAGCGGAAACACCAAAAATCTTACTGACCtgaggGATGTGGTGTCTGTTTGCTCGCCTAGCTGTGAACCTGGGAAGTTCAAGAAGTTTGCTCAGGGTCAGCACACCTGCTGCTATGAATGCATCAACTGCACTGAGAACCACTACTCCAATAACACTGACATGGACCAGTGTCTCTCTTGtgacacaaagagagagtggTCCCTGGAAGGGAGCTCTGGGTGTACCCATAAGACCCTGGAGTTCTTCTCCTGGCAGGATGGCTTTGCGGTGGCGCTGCTGACACTGGCGGCCCTGGGCATCGTCCTGGTTCTCCTGGTGGGGGCGCTCTTCCTACACCACCACCAGACCCCCGTTGTGAGGGCTGCCGGGGGGCCTCTCTCCCAGATCATCCTGCTCTCTCTAGTGGGAAGTTTTGTTAGTGCTGTGTTCTTTGTAGGTCATCCCAGCAGCCTACAGTGTAAGGTGCGTCAGGTGCTGTTTGGCCTCAGCTTCACCCTGTGTGTTTCCTGCATCTTGGTCAAGTCCCTGAAGATCCTGCTGGCCTTCCAGCTCAACCCTGACCTAAAGGATGTTCTCCGCCGCCTCTACCAACCGTATGCCATCATCTGTCTCTGCGTGGCCCTACAGGTCCTCACCTGCACCCTGTGGCTGGTCCTGCAGAGCCCCCGGGAGAAGGCCACAGTCTTCACCACCACTGTGTTGGCCGAGTGTGACGAAGGCTCCCAAGTGGCGTTTGGTGTGATGCTGTGCTACATCGCTGTCCTGGCGCTCGTATGTTTTGCCTGCGCGTTTAAAGGCCGCAAGCTGCCACAGAAGTACAACGAGGCCAGGTTCATCACCTTCAGCATGCTCCTCTACCTGATGTCCTGGCTGATATTTGTGCCCGTCTATGTGACCACCTCTGGGAAGTACCTGCCAGCAGTGGAGATGGTGGTCATCCTCATCTCCAACTATGGCGTCCTCAGCTGTCATTTCTTCCCCAAGTGCTACGTCATCCTCTTCAAGAAGGAGCACAACACCAAGAGTGCCTTCATGAAGAACGTGTATGACTATTCCAGAAAGGGCATTACTGACTCTAGCTCTGTCTCTGAGATTTCAGTCTCTCAGACAGAAGGGTATCGCATCAGTCACCCTTACTCCATCAGTTCACCTTCCTTCTTCATGTCTCCTCCACCAGTAGAACCCACAGCACCTCAGAATTACTGGTCCGTTGACCAGAACATTCAGAGCATTGACACTGTAACCCATTGCACCGTAGTAGATCATGGAGTGTTTGTCACAGGTCAGCTGACTCGAACGCACCGTCTCAGGAGAAGCATGAGCCTATGAGTGGAGTGGACCAGTGTCTGGAACTTTTACATCTTACAGTACATCacacagtgtgtctctgtgatcctATCTTTGGTTTGACTGTTCCCATTTTGCTTAGTCTACTGGTATGTTTTTTGCCCAAATTGGTTGTTGACTTTTACATTCAAGGCAATttaggtaacactttatttgacacTGCTATTGTCAAACTCTGTCATACACTGTTATATTCATCTATCAATATTTGTATTGGTTAAGCACCAATGGTGTACAGGGTTTATTTATTTCTGAACTGCATAAGATTTCTATACTGTGTGAAATGTTCTAACTAAGCATCGTGGAGGATGTTGGTTTTTGCTATAGATATACCATCATGCTGTGTGTTGGATCCCTGATTAGGCCGTTTCTATGTGTAATGTATACAGTAAACAGCATTTCTATCTATTATGGGGGCTGATGCAACAGGATACAAATGAGATATTACATTTCATATTGAAAACAAGTCTACGATGAACACAATAGTTGGAATTTGTGTCAGTTTCTTAATGCATGCCTGGTTTGTCAGTGGACGTTATTGAAGTTCTCACATATTTCTAAGTACCTTGACATgtatttccacattattcatgtATATTATTCATGTATATATTAACATTACTTTGTGTACAGTATATTAAACGTTTGAATGTGCAGTTGA

Function

NR:

description
G-protein coupled receptor family C group 6 member A-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04622 GPRC6A; G protein-coupled receptor family C group 6 member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592506.2 True 3665 mRNA 0.50 8 18278958 18285197

Neighbor

gene id symbol gene type direction distance location
LOC110511716 LOC106579594 coding downstream 30824 18237744 ~ 18248134 (-)
zufsp cf113 coding downstream 59376 18210021 ~ 18219582 (-)
LOC110511774 LOC106579313 coding downstream 71936 18200058 ~ 18207022 (-)
LOC110511808 LOC106579331 coding downstream 96175 18180490 ~ 18182783 (-)
LOC110503747 lars2 coding downstream 124484 18093704 ~ 18154474 (-)
LOC110503742 cndp1 coding upstream 5452 18290649 ~ 18292476 (-)
LOC110511684 LOC106605538 coding upstream 13542 18298739 ~ 18311500 (-)
LOC110511626 LOC106579251 coding upstream 68324 18353521 ~ 18359014 (-)
LOC110503735 LOC106605534 coding upstream 319562 18604759 ~ 18623150 (-)
laptm4b LOC106605533 coding upstream 326895 18612092 ~ 18624427 (-)
G231079 NA non-coding downstream 49587 18227984 ~ 18229371 (-)
G231091 NA non-coding downstream 70683 18208074 ~ 18208275 (-)
G231081 NA non-coding downstream 79033 18198289 ~ 18199925 (-)
G231080 LOC106579327 non-coding downstream 81249 18194425 ~ 18197709 (-)
G231073 NA non-coding downstream 101277 18177445 ~ 18177681 (-)
G231126 NA non-coding upstream 7382 18292579 ~ 18292797 (-)
G231127 NA non-coding upstream 7945 18293142 ~ 18293427 (-)
G231128 NA non-coding upstream 8278 18293475 ~ 18293701 (-)
G231129 NA non-coding upstream 10077 18295274 ~ 18295495 (-)
G231131 NA non-coding upstream 21759 18306956 ~ 18307258 (-)
LOC110505118 LOC106579600 other downstream 301049 17975160 ~ 17985544 (-)
G229707 NA other downstream 1230614 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1428759 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 1439119 16839389 ~ 16839839 (-)
G231652 rn146 other upstream 314533 18599730 ~ 18601875 (-)
LOC110511176 LOC106579058 other upstream 874103 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 1256905 19416054 ~ 19652601 (-)
G232980 NA other upstream 1362889 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 1471007 19756204 ~ 19757908 (-)

Expression


Co-expression Network