laptm4b (LOC106605533)


Basic Information

Item Value
gene id laptm4b
gene name LOC106605533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18612092 ~ 18624427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592437.2
CCCAGGTCACATGCTCCAATGTTTGCTACTTGCCTGAGTTGATCGCTAGAGCCGCGGTGAGGCTTTAATCACGAATTGCGGACGACACCGTGCGCGACGGAGAAGAAATTCACGTCGATCTATTGGATTGTTTATCATTAACATATAGATATCTGTGAAGTGCCTCCTCCTCGGACTACAATATGATTTCCCCGTGGGACCGATGGCATTCCACCAGATGCTGCCTGTGCTGTCATGTCCGCACAGGCACTGTTATCCTGGGGGTTTGGTATATGCTGATCAATGCGGTGGTGTTACTCATCCTCGTCACGGCCCTGGGTGATCCTGACCAGTACCATCTGACCAGCGCTGAGCTGGCTAACGACTTAGATGACATGGATGACGCCAACATGTGTATTGCTTCAGCAATCTCGTTGTTGATGATACTAATTTCTGGGATGGCGACCTACGGTGCGTATAAGcaacaTGCTGCTTGGATCATCCCATTCTTCTGCTACCAAGTCTTTGACTGTGCACTGAACACCCTGGTGGCTGTTAGTATTGTGGTCTACCCCAACACCATACAAGATTACCTCCAACAGCTGCCTGAGAACTTCCCCTACAAAGAGGACATCATGGCCATGAGCAATGTGTGCCTGGTCTTTATCGTGCTCCTCTTCATCGGATGCATCCTCACCTTCAAGGCATACCTGATAGCGTGTGTGTGGAACTGCTACCGGTATGTGCGTGCAAGAAGCACCACAGAAGTCCTGATATACGTCACTACTAATGACACCACGGTACTGTTACCCCCATACGATGACACCATGGCTATTCCATCATCCAAGAACGCTCCTCCCCCCTATGGGGCACCCTACATAGCATGAAGAACCTGGGCCGCTGTTCTGCTGACGGACTGGACCCCCTTGTTACTACAGCAGCCAGACATTCCAAACAGACCTGGGCAACAAATATGATGTTTTCTTTCCAATACATTATGCATTTTATAGTTGGTTTGATAACTGTCACACTGGGTGTGTAGTGTTAGCagtattttaatttaaaaaaaaatgttttgtaataaTTTGACCCAGACCCCAATACTACTGATTATTTCCAAAACATTTAACCTACACACATTTACTTACCTGTTACTGTGATACTGTTTAACATTATACTGTTTATTTGGAGTTATTTATTTTCGCTGATCTACAGTTGAAACATTGAGCAGGAAAGAGTTAAAATATGAGCGCTAGTAGTGAGTGTAATAGCAGATATATTTTTCTTGCTTGTACTAAACTGTACTTCTACATGTTCTCTACTGTCAGTCCTAGTCCAAAGGCCACCCACCAGAAACGTGTTTTCATGGTCTAAGTACACACCCTCAGGGgtgtcccctcctgtattcccttttcacccacgactgcgtggccaaacacgactccaacaccatcattaagtttgctgacgacacaacagtggtgtgcttgatcaccgacaacgatgagacggcctatagggaggaggtcagatgactggcagtgtggtgccaggacaac
>XM_036970759.1
CCCAGGTCACATGCTCCAATGTTTGCTACTTGCCTGAGTTGATCGCTAGAGCCGCGGTGAGGCTTTAATCACGAATTGCGGACGACACCGTGCGCGACGGAGAAGAAATTCACGTCGATCTATTGGATTGTTTATCATTAACATATAGATATCTGTGAAGTGCCTCCTCCTCGGACTACAATATGATTTCCCCGTGGGACCGATGGCATTCCACCAGATGCTGCCTGTGCTGTCATGTCCGCACAGGCACTGTTATCCTGGGGGTTTGGTATATGCTGATCAATGCGGTGGTGTTACTCATCCTCGTCACGGCCCTGGGTGATCCTGACCAGTACCATCTGACCAGCGCTGAGCTGGCTAACGACTTAGATGACATGGATGACGCCAACATGTGTATTGCTTCAGCAATCTCGTTGTTGATGATACTAATTTCTGGGATGGCGACCTACGGTGCGTATAAGcaacaTGCTGCTTGGATCATCCCATTCTTCTGCTACCAAGTCTTTGACTGTGCACTGAACACCCTGGTGGCTGTTAGTATTGTGGTCTACCCCAACACCATACAAGATTACCTCCAACAGCTGCCTGAGAACTTCCCCTACAAAGAGGACATCATGGCCATGAGCAATGTGTGCCTGGTCTTTATCGTGCTCCTCTTCATCGGATGCATCCTCACCTTCAAGAAACCCTTGGGGACAGACAGAGGGTCCTGCAGTGGTTCAAACGTCTGGCAGGAGCCGTTTCACAAGGCTGTTGTTTTCATAACACTATAATGGGAGCCATTAAGGCAGTGCCCTCGTCAGTGTTGCTCTTGGCCCATTCAGGCTAGAGAGCTTTCACATTAGCTCTGACAAACTGTCAGATGATGCCAACTACCAATGTCCCACCACACTATACAACTCTGTTTTATGGTATTGTAAAAGCCCCTCTAAATGGCCTGCCTGTTCTATTAGGCTGCTGCTACAGAGCTCCATAGACCATCCAAAAGTAGGGAAACAGATTGAGAGAAAGAGGATGTGGTTTATTTTGATAGACTTCAGTAAGGCTCTGTGTCACCATGTAAAACTGTGGAGATGCCTTACTGAGGCCATCTTAATGCAAACATGCTATAATAATGAGGATGACCACACATTTCTATTACTTCTGGTCCAATCCAAAAGTAAGGGTTGATATGTAGCTTTGCTCTCAGTGAGTGATAATTGTTCTGTATAGATGTTGCTACCTCTACCAGCATATCATCCACAGACGACTGACGATTGTATGTGAGTTTAGCACATTGAGTAATGTATTTTGGAAACACAGAatgtctatagacagtatataccaTTACTTTACGTTGTTGAAGAGCCCGTAAAAGTGACAGGTGTGAATTCATTAaagttttgttac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592437.2 False 1538 mRNA 0.46 7 18612092 18624427
XM_036970759.1 True 1389 mRNA 0.46 6 18620566 18624427

Neighbor

gene id symbol gene type direction distance location
LOC110503735 LOC106605534 coding downstream 1216 18604759 ~ 18623150 (-)
LOC110511626 LOC106579251 coding downstream 253078 18353521 ~ 18359014 (-)
LOC110511684 LOC106605538 coding downstream 300592 18298739 ~ 18311500 (-)
LOC110503742 cndp1 coding downstream 319616 18290649 ~ 18292476 (-)
LOC110511708 LOC106579301 coding downstream 326895 18278958 ~ 18285197 (-)
LOC110511506 lyric coding upstream 154 18624581 ~ 18633247 (-)
LOC110511375 NA coding upstream 8972 18633399 ~ 18676640 (-)
LOC110511352 LOC106605528 coding upstream 72910 18697337 ~ 18706474 (-)
LOC110511312 LOC106605543 coding upstream 169558 18793985 ~ 18797369 (-)
LOC110511207 oxr1 coding upstream 202452 18826879 ~ 19024152 (-)
G231649 NA non-coding downstream 16596 18594986 ~ 18595496 (-)
G231648 NA non-coding downstream 18810 18593036 ~ 18593282 (-)
G231646 NA non-coding downstream 20413 18591471 ~ 18591679 (-)
G231621 NA non-coding downstream 69721 18542022 ~ 18542371 (-)
G231617 NA non-coding downstream 76594 18535270 ~ 18535498 (-)
G231677 NA non-coding upstream 56610 18681037 ~ 18681288 (-)
G231679 NA non-coding upstream 59685 18684112 ~ 18684718 (-)
G231686 NA non-coding upstream 85665 18710092 ~ 18710295 (-)
G231753 NA non-coding upstream 190384 18814811 ~ 18815043 (-)
G231755 NA non-coding upstream 191944 18816371 ~ 18816870 (-)
G231652 rn146 other downstream 10217 18599730 ~ 18601875 (-)
LOC110503747 lars2 other downstream 481038 18093704 ~ 18154474 (-)
LOC110505118 LOC106579600 other downstream 634183 17975160 ~ 17985544 (-)
G229707 NA other downstream 1563748 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1761893 16849972 ~ 16850199 (-)
LOC110511176 LOC106579058 other upstream 534873 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 917675 19416054 ~ 19652601 (-)
G232980 NA other upstream 1023659 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 1131777 19756204 ~ 19757908 (-)
G233513 LOC106561082 other upstream 1927356 20551783 ~ 20551997 (-)

Expression


Co-expression Network