G231080 (LOC106579327)


Basic Information

Item Value
gene id G231080
gene name LOC106579327
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18194425 ~ 18197709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU264245
gtctatgaagcagtagatctgtgctatttctatgcttcctgtttaAGTTTAATTATTGCATTTTTCAGTTTCGTACACCAGTTTATGGAAGAGacatttcacagcagtttagatggtacaatgattctctacactatacttgcttgttttgtcacaaactgaaattaagcaaactagaatttttgcaaccaggaaatggcggagatttctgcatagtgcatctttaatggCATCAGGGTATAAATCAATTCATTGACCAGGGTGTATAAATGCCTTGAGGTGATTGTGTTTACAGCCAACTGGAGTTATAGTTCATGTCTAGAACATAAATGTGGGTGTTATTGGATGTCTTTCTTCTCTGGGCTTGGTTACATACAGTGACTTCCCTTCCTGTGATGATACCCTCCTGTTAGTATCGATTGCATTCAAAGTCGTAAATATTACAGTCGTGCTGCGCATCTCAGAAGAATTCTATATCAAATTGATGTCATTCCTGAGATGCAAAACACTTCTCCAGGCGTTGAGGGATCTGAATCTGTGCAGCACAACGTGACTGCAATAAAGATGATCTGGGACCGGACCtggtttcaaatactatttgaaatcatttcaaatgctttcttctgggcttgattgagcttgccaggcacaatggaaccaataaAATAGTCACAACACTGCAATCCCCACCGATCTGGCAATCCAGGCAGGCTAGAGCAAATGCTCAAAGtattttaaatagtatttgaaaacaGGTCTGCCTTCTTCCTCGTTCAGTCCTCATCACTGCCCAGTGCCAGAGGGTCAAAGTCAGGGTCGTCTTCATCCAAGTCGAGTTCCTCAAGGTCCTGGAAGAGGGACTCGTCCACTTCAACACTGTTTCCAGAATCTTCCAGGAACTGTATATCTGATGTGTCAAGATTGTGATCGGTCTCAAATAGCTTTTTTcCTGTGAGTTTAATCTTCCCAgcctgctgctgctcctcctctttCTGCCGTTTCCTCCTCAACTCAGCCATCTCCAGCTCAAACTTGGCTTTCCATGACAGGAAGTTCTCGATGGTGACCACTGTTCCTTGGAAGAGCACCTTCTCAGCCTCCTCCGCTGCCTCCTCTTTTcgcctcttctcttcctctcttctgttTATCTCGTCGACTAATTCATTCAGTTTGTCCTGAACTGCTGTAACTAGGGTGAATATCATCACCATTCCTAGGTTTTCC

Function

NR:

description
PREDICTED: RWD domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264245 True 1224 lncRNA 0.43 3 18194425 18197709

Neighbor

gene id symbol gene type direction distance location
LOC110511808 LOC106579331 coding downstream 11642 18180490 ~ 18182783 (-)
LOC110503747 lars2 coding downstream 39951 18093704 ~ 18154474 (-)
LOC110511851 LOC106579350 coding downstream 109396 18049746 ~ 18085029 (-)
LOC110511860 LOC106579366 coding downstream 145584 18033343 ~ 18048841 (-)
LOC110505118 LOC106579600 coding downstream 216772 17975160 ~ 17985544 (-)
LOC110511774 LOC106579313 coding upstream 2349 18200058 ~ 18207022 (-)
zufsp cf113 coding upstream 12312 18210021 ~ 18219582 (-)
LOC110511716 LOC106579594 coding upstream 40035 18237744 ~ 18248134 (-)
LOC110511708 LOC106579301 coding upstream 81249 18278958 ~ 18285197 (-)
LOC110503742 cndp1 coding upstream 92940 18290649 ~ 18292476 (-)
G231073 NA non-coding downstream 16744 18177445 ~ 18177681 (-)
G231072 NA non-coding downstream 18353 18175707 ~ 18176072 (-)
G231065 NA non-coding downstream 35836 18158253 ~ 18158589 (-)
G230858 NA non-coding downstream 113913 18079293 ~ 18080512 (-)
G231081 NA non-coding upstream 580 18198289 ~ 18199925 (-)
G231091 NA non-coding upstream 10365 18208074 ~ 18208275 (-)
G231079 NA non-coding upstream 30275 18227984 ~ 18229371 (-)
G231126 NA non-coding upstream 94870 18292579 ~ 18292797 (-)
G231127 NA non-coding upstream 95433 18293142 ~ 18293427 (-)
G229707 NA other downstream 1146081 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1344226 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 1354586 16839389 ~ 16839839 (-)
G231652 rn146 other upstream 402021 18599730 ~ 18601875 (-)
LOC110511176 LOC106579058 other upstream 961591 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 1344393 19416054 ~ 19652601 (-)
G232980 NA other upstream 1450377 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 1558495 19756204 ~ 19757908 (-)

Expression


Co-expression Network