RNA id: LOC110503735


Basic Information

Item Value
RNA id LOC110503735
length 1582
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC110503735
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18604759 ~ 18623150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACCGAAGAGCAGAAGTCATATCACCAAGTTACTCAGAGCCTGTGTAAAGGCAAGCCCCTGGATTTTGTGTTCATCATCGACAGCTCCCGCAGCGTGCGTCCCAGCGACTACGAAAAGGTCAAGATCTTCATCACCAACATCGAGGCCTTCCTGGACGTGGGGCCGGAGGCGACGCGCGTCGGGCTGCTGCAGTACGGCAGCGTGGTGCAGAACGAGTTCTCCCTCAACACCTACAGCAGCAAGTGTGATCACCTCTGTGTGAGCACCCCAGCCTCCTACATGTGCCGGTGCAGAAGGGGTTACACCCTTAACTCTGATGGCAAGACCTGCCGCATGGAAGACCCATGTGATGTGGTGGACCATGGCTGTGCCCACATCTGTGCCAACATGCCAGGGGTACTCGGCTACGAGTGTCGCTGCCGGCTTGGGTATGAACTCAACGAGGACGAGAGCACGTGCCGAAtgaccTGGGGAACCATGGCTGTCAGCATGACTGTGTCAGCTCTCCTGAGTCCTACGTCTGTAGATGCACGAGGGGCTATGTTCTCAACCGCGATGGCAAGACCTGCAGCATTGATTTGGGGTGTCGTGGCGACTCAACACTATTTGTCTCTAATACGGCAGTGTTCAGATGGAGTGATGGATCTGGTATTTGTAATTGATGGTTCTAAGAGCCTGGGGCCGGCCAACTTTGACCTTGCAAGCAGTTTGTGAACAGCATTGTGTACTCTCTGGACGTGTCCGGCACGGGCACCCACGTGGGGCTGCTGCAGTACTCCAGTAAGGTCCGCACAGAGTTCATCCTGGGTCAGTATACCTCAGGCCGGGACATCAACAGGGCCTGTGTCGCGGATGCAGTACATGGGCAGAGGATCCATGACGGGCGCTGCCCTGCGTCACATGTTTGAGTACAGCTTCTCTGCCAAGGAGGGGGCCAGGCCCGACATGCCACGGATCAGCATCGTGTTCACCGACGGACGATCCCAGGATGATGTGTCGAAATGGGCCACTAAGGCAAAGGATGCCGGTACGGTTTCTTACATCGTGTTTGCTGAACTTGTTCTGATTGCAGAGCCATTTAAAGAGCCTTTAATAGAGTACCATCTTCTCTTAAAGGAGTCATTCATCCACTTCCTTCTGAACTGCTTCCCCGCCCCCAGGTATCACGATATATGCACTTGGTGTTGGTAAAGCCATCGAAGAGGAGCTCAGGGAAATTGCTTCCGAGCCAGATGATAAGCATTTGTACTATGCTGAAGATTTTAGCAACATGGGAGAAATTACAGACAAATTGAAGTCACGGATATGTAAAGGTACCCAATGAATAAAACACACTCTAAAATAACTTTCTTATTAAAGATCCATCACAGCTACACATTATTCATTATTTCTCACACTTTTCCTGCAGTGCACAAATCGTCTCATCTTGAATAAATTATCAAATCTATAAATACAAATACTAAATCAAAAAATGCCCCTGACCCCATCTAAAGTCTTAAAACTAATCCGATTGTTTATGGTGGTGCTTATAGACTTCCATATAATTttttatacttaagcaataatccctgaaggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264856 lncRNA downstream 9263 18594986 ~ 18595496 (-) True G231649
TU264855 lncRNA downstream 11477 18593036 ~ 18593282 (-) True G231648
TU264853 lncRNA downstream 13080 18591471 ~ 18591679 (-) True G231646
TU264826 lncRNA downstream 62388 18542022 ~ 18542371 (-) True G231621
TU264822 lncRNA downstream 69261 18535270 ~ 18535498 (-) True G231617
TU264902 lncRNA upstream 70161 18681037 ~ 18681288 (-) True G231677
TU264904 lncRNA upstream 73236 18684112 ~ 18684718 (-) True G231679
TU264912 lncRNA upstream 99216 18710092 ~ 18710295 (-) True G231686
TU264997 lncRNA upstream 203935 18814811 ~ 18815043 (-) True G231753
TU264999 lncRNA upstream 205495 18816371 ~ 18816870 (-) True G231755
XM_021592469.2 mRNA downstream 245745 18353521 ~ 18359014 (-) True LOC110511626
XM_021592464.2 mRNA downstream 245747 18353521 ~ 18359012 (-) False LOC110511626
XM_021592497.2 mRNA downstream 293259 18298739 ~ 18311500 (-) True LOC110511684
XM_021582235.2 mRNA downstream 312283 18290649 ~ 18292476 (-) True LOC110503742
XM_021592506.2 mRNA downstream 319562 18278958 ~ 18285197 (-) True LOC110511708
XM_021592437.2 mRNA upstream 1216 18612092 ~ 18624427 (-) False laptm4b
XM_036970759.1 mRNA upstream 9690 18620566 ~ 18624427 (-) True laptm4b
XM_021592405.2 mRNA upstream 13705 18624581 ~ 18633247 (-) False LOC110511506
XM_021592410.2 mRNA upstream 13705 18624581 ~ 18633247 (-) False LOC110511506
XM_021592418.2 mRNA upstream 13705 18624581 ~ 18633247 (-) False LOC110511506
TU264859 other downstream 2884 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 473705 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 474673 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 626850 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1556415 17045025 ~ 17048344 (-) True G229707
TU265301 other upstream 548424 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 931226 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 1037210 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1145328 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1940907 20551783 ~ 20551997 (-) True G233513

Expression Profile