RNA id: TU264904


Basic Information

Item Value
RNA id TU264904
length 607
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G231679
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18684112 ~ 18684718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacctattgctgctcattggaccctcattgcttctgaagctaagcagggttggtcctggtcagtccctggatgggagaccagatgctgctggaagtggtgttggagggccagtaggaggcactctttcctctggtctaaaaaaaaatatcccaatgccccagggcagtgattggggatattgccctgtgtagggtgccatctttcggatgggacgttaaacgggtgtcctgactctctgaggtcattaaagatcccatggcacttatcgtaagagtagggttgttaaccccggtgtcctggctaaattcccaatctgaccctcaaaccatcacggtcacctaataatccccagtttacaattggctcattcatccccctcctctcccctgtaactattccccaggtcgtttcTGCAAATgggaacgtgttctcagtcaacttacctggtaaaataacggataaataaaaataaataaataaatgatcacttggctacacatgcctctccctaatgtcaatatgccttgtctactgctgtgtcagttagttattattgttttatttcactgtagagcccccagcccCGCCTAACATtccttagatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264902 lncRNA downstream 2824 18681037 ~ 18681288 (-) True G231677
TU264871 lncRNA downstream 60962 18610508 ~ 18623150 (-) True LOC110503735
TU264856 lncRNA downstream 88616 18594986 ~ 18595496 (-) True G231649
TU264855 lncRNA downstream 90830 18593036 ~ 18593282 (-) True G231648
TU264853 lncRNA downstream 92433 18591471 ~ 18591679 (-) True G231646
TU264912 lncRNA upstream 25374 18710092 ~ 18710295 (-) True G231686
TU264997 lncRNA upstream 130093 18814811 ~ 18815043 (-) True G231753
TU264999 lncRNA upstream 131653 18816371 ~ 18816870 (-) True G231755
TU265000 lncRNA upstream 132325 18817043 ~ 18817417 (-) True G231756
TU265001 lncRNA upstream 132822 18817540 ~ 18818396 (-) True G231757
XM_036970792.1 mRNA downstream 7472 18633399 ~ 18676640 (-) False LOC110511375
XM_036970799.1 mRNA downstream 7472 18633399 ~ 18676640 (-) False LOC110511375
XM_036970824.1 mRNA downstream 7473 18633399 ~ 18676639 (-) False LOC110511375
XM_021592305.2 mRNA upstream 12619 18697337 ~ 18705226 (-) False LOC110511352
XM_021592313.2 mRNA upstream 12619 18697337 ~ 18706474 (-) True LOC110511352
XM_021592284.2 mRNA upstream 109267 18793985 ~ 18797176 (-) False LOC110511312
XM_021592290.2 mRNA upstream 109267 18793985 ~ 18797187 (-) False LOC110511312
XM_021592293.2 mRNA upstream 109267 18793985 ~ 18797369 (-) True LOC110511312
TU264859 other downstream 82237 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 553058 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 554026 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 706203 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1635768 17045025 ~ 17048344 (-) True G229707
TU265301 other upstream 474582 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 857384 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 963368 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1071486 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1867065 20551783 ~ 20551997 (-) True G233513

Expression Profile