RNA id: TU264999


Basic Information

Item Value
RNA id TU264999
length 500
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G231755
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18816371 ~ 18816870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCCTGATATATGATAGGTATCATCATAAAATAACTGTTTAttagtaattgtgtgtgtgtgcatacattatCTCCTATGTCATCTTCATGATCATGGTGGTGTTCCTGATGTCCATGGGGAACTGGTCTGTGTCCCAGCCCAGGTCAGGAGaacccagttctctgctgccaatgactggaacgaactacaaaaatatctgaaactggaaacacttatctccctcaccagctgtcagagtagctcacagatcactgcacctgtacatagcccaaacaactacctcttcccctactgtatttattgattttgctcctttgcaccccagtatttctactttgcacactcatctactgtcaaatataccattccagtgttttaattgctatattgcatTTACTTccccaccatggcctatttattgcctttacctcccttatctcaccttatgtgctcacattgtatatagacttatttttctactgtatgtttgttttactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264997 lncRNA downstream 1328 18814811 ~ 18815043 (-) True G231753
TU264912 lncRNA downstream 106076 18710092 ~ 18710295 (-) True G231686
TU264904 lncRNA downstream 131653 18684112 ~ 18684718 (-) True G231679
TU264902 lncRNA downstream 135083 18681037 ~ 18681288 (-) True G231677
TU264871 lncRNA downstream 193221 18610508 ~ 18623150 (-) True LOC110503735
TU265000 lncRNA upstream 173 18817043 ~ 18817417 (-) True G231756
TU265001 lncRNA upstream 670 18817540 ~ 18818396 (-) True G231757
TU265015 lncRNA upstream 48351 18865221 ~ 18866306 (-) True G231771
TU265134 lncRNA upstream 212565 19029435 ~ 19029893 (-) False G231886
TU265135 lncRNA upstream 212565 19029435 ~ 19029893 (-) True G231886
XM_021592293.2 mRNA downstream 19002 18793985 ~ 18797369 (-) True LOC110511312
XM_021592290.2 mRNA downstream 19184 18793985 ~ 18797187 (-) False LOC110511312
XM_021592284.2 mRNA downstream 19195 18793985 ~ 18797176 (-) False LOC110511312
XM_021592313.2 mRNA downstream 109897 18697337 ~ 18706474 (-) True LOC110511352
XM_021592305.2 mRNA downstream 111145 18697337 ~ 18705226 (-) False LOC110511352
XM_021592238.2 mRNA upstream 10009 18826879 ~ 18835330 (-) False LOC110511207
XM_021592221.2 mRNA upstream 10009 18826879 ~ 18902473 (-) False LOC110511207
XM_021592216.2 mRNA upstream 10009 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA upstream 10009 18826879 ~ 19024152 (-) True LOC110511207
XM_036971043.1 mRNA upstream 248642 19065512 ~ 19282368 (-) False LOC110511176
TU264859 other downstream 214496 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 685317 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 686285 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 838462 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1768027 17045025 ~ 17048344 (-) True G229707
TU265301 other upstream 342430 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 725232 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 831216 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 939334 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1734913 20551783 ~ 20551997 (-) True G233513

Expression Profile