RNA id: XM_021592227.2


Basic Information

Item Value
RNA id XM_021592227.2
length 4403
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110511207
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18826879 ~ 19024152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATTACTCCGCATGTCTCAACTGTTCCCACTTTCTGCTATGATGCTGCACGCTTGCAGAAAAATTAAGACTGAATTCTGTTTCACACCGACTGAGAATGTTTGTAAACAACTGAACCCAGGTCATTGCACGAGATCCCTTCTGAAAGTCTACAGTCTGAAGGCTCAACCTCTCACCTAGAACAACCCTCTGAACAGCAGCAACAAGACATCGCCAAGATGTTCAGCACCAAAAGACTGAAGAAGAAATCCCAGTCAGTGGATATTGCCACTCAAAGATTCTCCCCTACCCTGGTGCCAGCCTCACCTCACAAGACTGAACCACCTGTTACCAAGACAACCACGTTGGGGGTGCAGCAAAACAATGCAACCAATTCCCAGAGAATCTGCAGTCCACGGTGCGGCGAGCTGAAACGCGGCTACACCATCGATACCAGCCAGAAGAAGAGTCAAGAGAAGAAGGATGGCAGCAGACGCATGTCGTTCCAGAGACCCAAAGGAACCATTGAGTATGCTGTGGAGACGCGGGACACACTGAACAACATAGCGCTCAAGTTTGACACCACACCCAACGAGCTGGTTCAGCTCAACAAGCTGTTCTCCAGAGCCGTCTGCCCTGGCCAGGTTCTGTATGTTCCTGATCCTGAGCACATATCCAGTGTGGGGAGCTCCCCTTCCCTTAGCCCCATCAGCCCTCTGTCTCCCACCTCCTCAGAAGCTGACTTAGAGAAGGAATCCAATGGCGCTCCCAAGCCAGAGgctcaccatcatcaccatgctCCGGTGTTCTCAGCACTCCGCCAGGCCCGTGTAGTGTCGTCCACCTCCGAGGAGGAAGAGGCCCTGACAGAGAAGTTCCTCAAAATCAACTGCAAGTACATCACAGACGGCAAGggtGCGGTGAGCGGGGTGTTGCTGGTGACGCCCAACAACATCATGTTTGACCCCCACAGGATGGACCCTCTGGTGCAGGAGCACGGCTGTGAGGAGTACGGCTACATGTGTCCCCTGGAGGAGGTCATGTCTGCAGCCATCTACAAGGAGATTACTGACAGCAAGATCAGAGAGGCCGTGCCCGCGCATCTGGAGCCTTTGACTTCAGAGCGCgggccctccacctcctctcagcCAGACCCGGATCAGCATCTGAGAGTCCCAGGCAACGACAGCGGGAGCGCGGCCACCCGCAGTACAGAGGGCTCCTTCTCCGAGGACGTCTTTACAGAGTCAGAGCTGTCCCCCATTCGGGAGGAGGCCACTTCCTCCGAAGACCTCCGGCTGGACAAGTCTTCCTCAGCCACAGCCTCCACAGAGTCCATCCAAACTGTCACCCATGTGGCGGCCTTCACCCCTCCAGGGGAAGCCCCAGGGGCCGCAAGCAGCGCCTgcaagtcagtcagccagccgcCAGGGGAGGGCCAGGAGAAACAACCCACCACAGCAGAGGATAATCCAGACAGCCACACAGCCCAGAGCCAGTCTCCCATGGACTCCAAGCAGCACAGTGTGGATGTGGAGAAGGCAGCACCAAGCACACCCACCACCAGCCAGGGACCATGCCAAGGACCCTCCTCACGCCATGCCTCCCAGAGATCTACCACTGGGCCTGGGGAGCCCTCCGGCCAGGAGGGGGGTTCAGGGGACAGGTCCAAGCTGAGCAGAGAGGGGTCCCAGGACTCTGAGACGGACGTGGAGGAACTGAGGAAGATGTGGAAGAATCACACTATGCAACAAGCCACAGAGCAAATGGAGAATGTAACACAAAAGGAGGAGGGACAGGACTCTGCAGAAGtgtccaTGGAGCGGTGGAGGCACCGGTCCCACAAGTTCCTGTGTCTGCGGGTGGGCCAGCCCATGAAGAAGACGTTTGTGTCCAACGCCAGCGCCTCCATGCAGCAGTACGCCCAGAGGGACAGGAAACACGAGTACTGGTTCGCTGTGCCgcaggagaggtCCGAGCACCTGTATGTGTTCTTCATCCAGTGGACCCCAGACATGTATGGGGAGGGGGTGAAGGGTATCGGCCACGAGCCAGGGTTCATGGTGGTCAAGAAGCCTTCGGGGTCCGAGACAGGAGAAGACGAACCCCTCACGGATATAAACAACAAAGAGTGGGAGATCACCACCAAGGAGGAGGTGAATTCTAAGCATGCCACCTCTATCAAGATGGAGCTGGAGCCTGAGACCTTCAGACCCAACCTCAGTGAGCCTAGCGAGCTGCTGGAGGCACAGCAGATAGAGAAGCTGGCCAAGAACCTCCCTCCCCGTACCATTGGGTACCCCTGGACCTTGGCCTATGGCACCACCAAGCATGGCATGAGCATCAAGAGCCTGTACCGGGCCATGCAGGGGCAGGACACCCCTGTGCTGTTGGTCATCAGGGACAGTGATGGTGGGGTGTTTGGTGCGTTGGCGTCCGAACCCTTCAAAATCAGCGAGGGATTCTATGGCACGGGAGAGACCTTCCTCTTCACCTTCTGTCCAGAGTTTGAGGTGTACAAATGGACAGGTGACAATATGTTCTTTATGAAAGGAGATATGGACTCCTTAGCTTTTGGTGGTGGAAGTGGTGAGTTTGGCCTGTGGCTGGATGGAGACCTGTACCACGGCAGGAGTCACTCCTGTAAAACCTTTGGCAACCCCATGCTCTCCAAGAAGGAGGATTTCTATATACAGGACATTGAGATCTGGGCTTTTGAATAACAAAACCCACCACGGGAAAAAGAGAAGGACTAAACATCCCTACAATGGCAATGTTGCCTCAAACCTAACTGCACATCACCACCCTGCTCCAACCCACTGTCTGGGGCTCCCAGGACGGAGCCAGCTGAAGGATGCGTGTTGTGCGTTCATACGTTACTACTGCAGTTATAACAGAGCTTTTCTTTGTGAATGACCTTGTGTGTATCTTGTTACAGCTGTGTGCAGCGTCTTTGAGGAggtgtactgtcctgtactatacTGTGAGGCATCAGAGGATGTGTGGGTTTGTTAAGAGACCGTAGGGACGCCTTGTTGCAGAACCGAGGAGGAGCAATCAGATCGCTCTCTCTGACCTTTGCAGGAGATGATGTCGGCTCAGGTTTGTGATTGAGAGAGAAACTGCCGTAGTCCAGATTATCTGAATTTTGAGACACTCAAGGAACCCCGCCCCTCAGAACTTGGTTGACGTCAGTCAGTAGGATGTTACTATATGTGTTGTTACAGGCCTTTAGTGGAGAGATCCAGTAATAAAATTAACAACATGCGTTCCTTTGTTCTCAGAGGAGACGGTTGAACCTAACATAGTTCTGGTTGGTGTTCAAAAACTGAAGGAATAATCTCAGCAGAATGTGAGGATGATGAGGACACTATATTATGAGGGGAGGAAAGTATTTTACATTGGTTTACTTCTGAGGCAAGAACTACGTATAGTGTTGTGTATTGTAGTCCTATTGTTCACCATCACAGCACATAGCTAGAATCAGAATATTACCCATCGTTGTACTAATAATGTTCTGTTCAGTGGGTGTACTACGTGTGAGTTCAGCTACCACCGGCGCCCCTCAGGAGTCGTGTGTACTGTTCGTAGACAGTAATGTGTTGCAATAGATTTGTGGAATATGCAAATTACTGTCATGTGACCTCAAATAATCCAGGTTGGCGCTTTTCCTCGCCTGTCCGTGGCTCATTATCAGAGAGAACTTGTAAAGCTTTCATGTCTTGATCCACAATTGCTTTTCTGGGTATAATTTGAAAAGCCTGAGACATGGTTAACTGTTTTACATGCATATGACAattgtatattatttatatatatataattaattaTATGTTGCTGTTGTGTGACAGTGATCTTTTTGTGCTGATATTTCAGCTGTTacaaatatattgtatattacCCTGTAAATTCATGTTAAAATAGATTTGTTCCTAAATAGAAACACATATATGATTGGTGGGTTGCTTCTAGCACTTGAATCCGGTCTATACACCAGGTTCTTAGACTTCTAGTAGCTGTACAGTAATTTTTGTTTCGAATCTAAAAACATGTTAACTGTTGGTAGAAAGCTTGCTGCTATAATATTAAGGGTAAAGCTAAACTAATGCTCTGTGTAACTAAAGGAGAGTGTTGTTGTCCAGGAGTGAGGAGGCTGAATGTCGAAGAAGAATTTAACTTTCATCACAAGTTCTGTTGAGTGGTGAGTCTTCATTAGTTGGTAGACTGACTGTTTAAGACTGTGAACTAAGAGAAAATATGTACATTTAACTTCACAGCAGCTTTCCTTCCCCTTTCTGGTCTTCCACACCAGTATTTGTATCTATGGAGTCACAAAGAATAACATGGATAAGTCCTAATTATTTTACAGGGATACAATGTCTTATTGATGTATAAATAACAATAAAATTGTTGTAACCTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265001 lncRNA downstream 8483 18817540 ~ 18818396 (-) True G231757
TU265000 lncRNA downstream 9462 18817043 ~ 18817417 (-) True G231756
TU264999 lncRNA downstream 10009 18816371 ~ 18816870 (-) True G231755
TU264997 lncRNA downstream 11836 18814811 ~ 18815043 (-) True G231753
TU264912 lncRNA downstream 116584 18710092 ~ 18710295 (-) True G231686
TU265134 lncRNA upstream 5283 19029435 ~ 19029893 (-) False G231886
TU265135 lncRNA upstream 5283 19029435 ~ 19029893 (-) True G231886
TU265142 lncRNA upstream 10801 19034953 ~ 19035251 (-) True G231893
TU265331 lncRNA upstream 91938 19116090 ~ 19116568 (-) True G232059
TU265334 lncRNA upstream 97592 19121744 ~ 19121944 (-) True G232062
XM_021592293.2 mRNA downstream 29510 18793985 ~ 18797369 (-) True LOC110511312
XM_021592290.2 mRNA downstream 29692 18793985 ~ 18797187 (-) False LOC110511312
XM_021592284.2 mRNA downstream 29703 18793985 ~ 18797176 (-) False LOC110511312
XM_021592313.2 mRNA downstream 120405 18697337 ~ 18706474 (-) True LOC110511352
XM_021592305.2 mRNA downstream 121653 18697337 ~ 18705226 (-) False LOC110511352
XM_036971043.1 mRNA upstream 41360 19065512 ~ 19282368 (-) False LOC110511176
XM_036971122.1 mRNA upstream 391902 19416054 ~ 19424630 (-) False rims2a
XM_036971115.1 mRNA upstream 391902 19416054 ~ 19424631 (-) False rims2a
XM_036971108.1 mRNA upstream 391902 19416054 ~ 19582363 (-) False rims2a
XM_036971097.1 mRNA upstream 391902 19416054 ~ 19582365 (-) False rims2a
TU264859 other downstream 225004 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 695825 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 696793 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 848970 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1778535 17045025 ~ 17048344 (-) True G229707
TU265301 other upstream 135148 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 517950 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 623934 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 732052 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1527631 20551783 ~ 20551997 (-) True G233513

Expression Profile