RNA id: XM_021592284.2


Basic Information

Item Value
RNA id XM_021592284.2
length 1906
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110511312
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18793985 ~ 18797369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAATGGCTTTTGCAATTATTGGTTTAAGCATAGGATACTCCAGCTATCCTATAAGATTCGAATAATTCAAATGCATTTATAACGTTAACAATACTTTATATCATGGCCATTTTGTTGCAATTCTTGTAATGTATTATTCTGTTCTTCTTGACAACACAAGCGCAGTTGGTGAATTTATTATGAGGGTTGAAGCGGATGGAAACTCCCAAAACAGTCTGCGCATGCCCTCACCATTAgggacttttatttattttaagtttTGCTACCGCAGCCTATAAAAATTACCGACAAACGATTGCAGCCCATTTCTCATTCTCAGTCGAAATGATACACACAAAGTTATGCACTGTTGTAATGTAGTCTATATCGTTCTGTCAAATTAACAATGATGTTACTATGTAACGAAAAACGCGAGATTTTACCTGAAAGGAGCTTGCAACTTCATTTACACGCTCTTAGCAAATCTATGTCATGCTGTGCAGTGGAAAGGCTGTGCGTGTACTTGTTGAGCTCCAGGACCATCACAGAGTATGAGAGCCAGGTGATCTGGTCCCAGAGAACAGACATGGAGAAGGCTGCCAAACTGCTCCAGGTGGTGCTGAAGAAGGGTCACAACGCCTGTCTGCTCTTTTTCGACTCACTAGAAAAGTGTTGCCAGTGCCCCCCACAGTTCGAAAGAGTCACCGGCCTCCCAGagaggaggaggaccaaCACTGCCCCAACTTACGTCATCAACATCAGCCATTCCAATTTGAGTAACTGCATCATTGGAGATGGCAACTTTCAAGGTGTGACAACGTGTATACGACAACCTCAGAGCATGGGTTCAGAGGATGCTAGGCATGAGACAATGGGAGGCAACATCACCAGTGATCACCAGAGAGCAGTACAGGCCTGTCCAGATCCAGAGCTCCAGAGGAGTGTCCAGGTCTATGGGTCCCAACTACAGTATGTCATCATCGGGGACAACAACAACCTGCAGGCTGAATACATACcggaagaggaagaaggggaaGAAGAAGAACTCATTAATAAAAGTAACTGATTGGATTTGTGTAGTGCTTTTCCAGATGCTCAATGTGGTTTACATTGTATTGGGGAAACTCCCCTCATACACCACCAACTAGTTTCAATTTaaatcatttagcagactcttttatccagagtgacttacaggagcaattagtgtTAGgtgcctttcggttactggcccagcgctcttaactgctaggctacctgcctctggaGCCAAATGTTACATGTTCAAATCAggtgatagaaagttgtttttgagatttttgttttaagcctatcccaaaccttaacccttaacctaaccattTAGAGTTAATGCCTCACCTTAAGATCTCGGAGTTAAAGCCTAAATTAACTTTAACCTAAAAAatgtggagttaatgcctaaactttaATGTCTAAGCTAGTTGTTGTGTGGCACTGCATCAGTATCCGACAGAGCCATACATATATGGCTCTTCTATCCTAGATGCCATCTCctgctgttgtgcccttgagcaagtgaCTGCACCACGGGCGACCGTGGCTCTCAATCCCCATAAGTGATATGGGGACAAAATGTATGGCCATTGGTTAAATTGTAATGTTCCTTGCTGTGTCGATGAACTTGATTTCTGGGGAATGTATATGTATTGTAAATTGCTGTGTATTGTTTGGATAGTATAACTTAACCCTACATAATCAAAGAATGAACCATATTTTTGGTCCGTGGACTTATGGAGTAAGTATTGAATCTTACAGTACATACATTACGTTCTGTGAACCCAATGTATAATGACCGCACTGACCACCGCTATTGATAAAGTGCATTTCATTTGTTTTAAGTATTTAATGCTGTAACAAATAAAAAGGTGCTGTTTTACTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264912 lncRNA downstream 83690 18710092 ~ 18710295 (-) True G231686
TU264904 lncRNA downstream 109267 18684112 ~ 18684718 (-) True G231679
TU264902 lncRNA downstream 112697 18681037 ~ 18681288 (-) True G231677
TU264871 lncRNA downstream 170835 18610508 ~ 18623150 (-) True LOC110503735
TU264856 lncRNA downstream 198489 18594986 ~ 18595496 (-) True G231649
TU264997 lncRNA upstream 17635 18814811 ~ 18815043 (-) True G231753
TU264999 lncRNA upstream 19195 18816371 ~ 18816870 (-) True G231755
TU265000 lncRNA upstream 19867 18817043 ~ 18817417 (-) True G231756
TU265001 lncRNA upstream 20364 18817540 ~ 18818396 (-) True G231757
TU265015 lncRNA upstream 68045 18865221 ~ 18866306 (-) True G231771
XM_021592313.2 mRNA downstream 87511 18697337 ~ 18706474 (-) True LOC110511352
XM_021592305.2 mRNA downstream 88759 18697337 ~ 18705226 (-) False LOC110511352
XM_036970792.1 mRNA downstream 117345 18633399 ~ 18676640 (-) False LOC110511375
XM_036970799.1 mRNA downstream 117345 18633399 ~ 18676640 (-) False LOC110511375
XM_036970824.1 mRNA downstream 117346 18633399 ~ 18676639 (-) False LOC110511375
XM_021592238.2 mRNA upstream 29703 18826879 ~ 18835330 (-) False LOC110511207
XM_021592221.2 mRNA upstream 29703 18826879 ~ 18902473 (-) False LOC110511207
XM_021592216.2 mRNA upstream 29703 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA upstream 29703 18826879 ~ 19024152 (-) True LOC110511207
XM_036971043.1 mRNA upstream 268336 19065512 ~ 19282368 (-) False LOC110511176
TU264859 other downstream 192110 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 662931 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 663899 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 816076 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1745641 17045025 ~ 17048344 (-) True G229707
TU265301 other upstream 362124 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 744926 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 850910 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 959028 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1754607 20551783 ~ 20551997 (-) True G233513

Expression Profile