RNA id: TU264856


Basic Information

Item Value
RNA id TU264856
length 511
lncRNA type intronic
GC content 0.50
exon number 1
gene id G231649
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18594986 ~ 18595496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaccaatttttctctccatgtccctggatttcggccgctggctctggacgtccatgcctggatctcgcagctagctagctgctatccgtgtgactatcggctttcgtcgattccggagctaacatcaattgttccggagctagccagctgaagagttccatcaatcactcctgggctgcagtcacctatccggacccgttttgctgcctacgcggagccccaccgggccttcacggctagactgccgacgttgtctacccgagggaactgtccggctggctcctccggcgcaacgttgcctgggcgctcatctgcggcctgctagccgttggctatcttatcggctgctatctgaatagacaatcggacaatttttattttttttatttattgatttatttttcttcttgggcctctataactatatctattgtttttatttttgttgttgttgtgtgatttggattcatcccctctaccacacggaaacccactaatctactgacggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264855 lncRNA downstream 1704 18593036 ~ 18593282 (-) True G231648
TU264853 lncRNA downstream 3307 18591471 ~ 18591679 (-) True G231646
TU264826 lncRNA downstream 52615 18542022 ~ 18542371 (-) True G231621
TU264822 lncRNA downstream 59488 18535270 ~ 18535498 (-) True G231617
TU264817 lncRNA downstream 65594 18529086 ~ 18529392 (-) False G231613
TU264871 lncRNA upstream 15012 18610508 ~ 18623150 (-) True LOC110503735
TU264902 lncRNA upstream 85541 18681037 ~ 18681288 (-) True G231677
TU264904 lncRNA upstream 88616 18684112 ~ 18684718 (-) True G231679
TU264912 lncRNA upstream 114596 18710092 ~ 18710295 (-) True G231686
TU264997 lncRNA upstream 219315 18814811 ~ 18815043 (-) True G231753
XM_021592469.2 mRNA downstream 235972 18353521 ~ 18359014 (-) True LOC110511626
XM_021592464.2 mRNA downstream 235974 18353521 ~ 18359012 (-) False LOC110511626
XM_021592497.2 mRNA downstream 283486 18298739 ~ 18311500 (-) True LOC110511684
XM_021582235.2 mRNA downstream 302510 18290649 ~ 18292476 (-) True LOC110503742
XM_021592506.2 mRNA downstream 309789 18278958 ~ 18285197 (-) True LOC110511708
LOC110503735 mRNA upstream 9263 18604759 ~ 18610876 (-) False LOC110503735
XM_021592437.2 mRNA upstream 16596 18612092 ~ 18624427 (-) False laptm4b
XM_036970759.1 mRNA upstream 25070 18620566 ~ 18624427 (-) True laptm4b
XM_021592405.2 mRNA upstream 29085 18624581 ~ 18633247 (-) False LOC110511506
XM_021592410.2 mRNA upstream 29085 18624581 ~ 18633247 (-) False LOC110511506
TU263980 other downstream 463932 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 464900 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 617077 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1546642 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1744787 16849972 ~ 16850199 (-) True G229380
TU264859 other upstream 4234 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 563804 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 946606 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 1052590 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1160708 19756204 ~ 19756618 (-) True G233052

Expression Profile