RNA id: XM_021592410.2


Basic Information

Item Value
RNA id XM_021592410.2
length 3185
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110511506
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18624581 ~ 18633247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCAACCTTCTTGCTTTATCAGTGGGCAAGAAACCGGTTCATCAGTCATACGAGCTGGACAAATAGCTAGCTATATGAGGGTCATTTATTTCGACCGACTCAAATGTTACATGATTGACAGCTAGCTAACGCGTTAGCAGCTAGGTGGATGACAAGCTAGCGATGATCGTGGTTTTATTGTTTGCCCTGTCAAAACCGTTATttttagccagctaacgttaacttTTGCATATTCTGTCAATCATCGAGATCAACCCAAATGGCAGAGAACTGGCAGGACGCGACCTGTCAACAGGTCAAGTTGATAGCAGGTCGCCTGAATGAGCTTCTTTCCACTGGCCTAGACCTCTTGCACTCAGAACTCGGGGTGGATTTTGGAGTGAAGCCCGAGATTCCGCCATGGTTGATCTTCTTAGCAGCGTGCATTGGGCTCGTGCTAATGGTGGCTATGTGGGCCTCCGCATGTCGCGGGCTCTTCAAGAAGCGACCGACCATAGTTGAAGTTGAGGCCATGGAAAGCACTAAACCAGCTACTATCAAGACGGCAAAAGCAGAGGAACCGAAGAAAAAGAAAAGGAAACCTACAGAAAAGAAATCACAGCCAAATGGTAGTTTAGTTGCTGAGCTACAAGAGGAAGTCAGAGTGACTGAAGAAGACAACCTGCCAGTAGTGCCACATCATTCTCAAGTCAAGACAGAAAAGGCTTCTGAGGTAAAGAATACAAAGAAGAAGCAGAAACAGGCAGTAAAGGAGGCTAAGACGGCTTCTTCTCATGGCAAGGAATCGGAGGAAGTATCAGGCACCTGGGAGACCAAGGTCAGTAACAAGGAGAAGCGTGAGCAGCGCCGTAAAGACAAGACCACCGGTGACGGCTCAGGGAGCCCTGGAGGAGTGGATCCTCTGCCTAGTACTCCTCCCACAGAGTCAACCAAAGTCAGCCCCAAAGCTGCAAACCCTGGGTCTGTCTCTGAGAAGAAGGAAAAGAAGAAGAAAGGAGAATCCTCCAAAACCAAAGCAGAGAAAGCAGGTGCCGTTGCTGCTGTTGCCGTAGGCAGACCTCAAGCTATCAGCAGCGAGGAGGCTCCGGTAGTGACTGGAGGATGGACTGACCGGGCTGTGACGGCCCCAGCCCTTACCATTGTTCCTGATAAGGAGCACTGGACCACTTCTGAGAGCAATCAAGACACCACTGTCTGGGGGCACGAGACTGAAAGAAATGATACAGTGGAACCCCAGCTGCCGTGTCCCAGCCAGCCAGACGAGCCAGACGAGTGGTCTGGTCTGAATGGTGATGGGTCTGCTGCTGCAGCAGACGGGTGCTCTGACTGGAATGCCCCAGCGGAGGTGTGGGGGAACTATGAGGAACTCCCTGCTCCAGTAGAGGCTGCCCCCCCTGTCCTCGAGGAGTCCCTGCCAGAGACGGTCAAGCAAGTatctgatgaagagagagaaaaggcggagccTGCCGCTGATGGAACTGGTAAattgaaaaagaagaagaagaagaagaagaagcaagCTGAAGATGATGTAGTTACTGGCCAGGAGTCAGAGGAGCGAAGTAAAAAGGTTGTTGCTGAGGCCAAGGTGAAGAAGCAGCCAATCCAGGAgcctactgctcctgctgtcaaTGTTGCTGCTGTGAAGGCAAGAGTGGAGCAACCAGTTGTGGTTCAGAACACAGCCCCCATCACACAAGTGCCACCCCAACCCGCAGAGACGGAGCCTACTGCCAAGCAGAACAGTCTACCTGCTCCAACACATAAAAAACCTGAAGAGAGCCAGCCTTCCAAACCAGTGATGAAGAAGAAACGGGCAAGAAGAGAAACATGAGTTGGAGTCATGAACATTATATGCAAAATACTTTGGATAAAACAGCTGTTTATGCAACATATAAATACTTCCCCTtttaaaaacggaaatatcaaaCTTCTAAGTTCTGACCGGCCAGCTTCATATCCAAAATACAGCCTGGTCAAGCAGACTGGATCTAGATGAACTGTAAAGCTAAATTCTGCGATTCTGATCAATATCGTAGTGTGGGCACACATGAACTGTTTTCCAATTCCAATGAATCATTCGAACGATCATGTTTGATGATTAGACATCTAGAAAATGAATAATAAATCCTGATTTAATAGTGATTGGGATGTTGTGGCTTTGAGATTATTATAGAGGAAGAGTCAGCCGAGTCACGTTACTGGCCTTTATTCTGCAGTCTTTGTTTGCTGTTTATATCGTTAACCATATTGGTGCAGTGACTCCTGCTCAAAAGGTCAAGTCCAACACTACAAGGTTGTGTTCAATAGGGCACATGGTAGCGAACCGTTTTGAAAGGGAAAAACTAAATAAGCGATTGCTATCtgacaagtccaggtagtcctccctgtttcagtcaatTTTGTACTGTTTGGTGTCTCATGAAAACGACCCAAGGGAATCATGTTTAGCATTTGGATGCAGGTGGTGttagtggtatctctactattcTGCTGTACATGGAAAATACATACTTTCAGTTACTTGCTGTTATTTTGATAATCAGTGTTGTGCTCAGACTGTGTAGTTGCTTCTACCATTGATGGCTGTTGTCCTGTCCACCCGTGGTTGATGATTCAAAAGTCCTCAACCTTTTGTAACCTCTTTGTAATGAAACCGCTTCAAGccatatgtaaaaaataaaaaggccCTTTTCTATATTTGATTTGTcttttatatttctatagtttttTCCTATTAATCAGTTACCTcttatttttctctttcttttgaGCAACTGATTGGTGTTTAGTCCTGCTGTAGACAGGATGGTTTCAAACTGCTTTAATCAATTATGTATTTGTAATGATGCAGTAATCAGGAATACAATTTGATGCCTTAGTTGGTTGGGTAATGTAGGCATGTGCTCTACCAACCGTTTTAATGTGCTGATTGTGTCCTATGTTGGACCATGTTTATTCTGCACCCTGAATCTTTCTCCACTTGTCTTTCTTCTTCTGGAAATGTAACATGTGAATTGCTTCCATTTTTCCTGATTGGGGATAGTAATGTCTCGGTTGAATTATTTAAATCAATGTGTTTGATACTTGTCCTTTACCTCTGTCTTTATTGTCAGAATGTTCCAAATGCAATAGAATCATATGCCCTTTGTGTGAATTTCTACCATAAAGATCATAAAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264871 lncRNA downstream 1431 18610508 ~ 18623150 (-) True LOC110503735
TU264856 lncRNA downstream 29085 18594986 ~ 18595496 (-) True G231649
TU264855 lncRNA downstream 31299 18593036 ~ 18593282 (-) True G231648
TU264853 lncRNA downstream 32902 18591471 ~ 18591679 (-) True G231646
TU264826 lncRNA downstream 82210 18542022 ~ 18542371 (-) True G231621
TU264902 lncRNA upstream 47790 18681037 ~ 18681288 (-) True G231677
TU264904 lncRNA upstream 50865 18684112 ~ 18684718 (-) True G231679
TU264912 lncRNA upstream 76845 18710092 ~ 18710295 (-) True G231686
TU264997 lncRNA upstream 181564 18814811 ~ 18815043 (-) True G231753
TU264999 lncRNA upstream 183124 18816371 ~ 18816870 (-) True G231755
XM_021592437.2 mRNA downstream 154 18612092 ~ 18624427 (-) False laptm4b
XM_036970759.1 mRNA downstream 154 18620566 ~ 18624427 (-) True laptm4b
LOC110503735 mRNA downstream 13705 18604759 ~ 18610876 (-) False LOC110503735
XM_021592469.2 mRNA downstream 265567 18353521 ~ 18359014 (-) True LOC110511626
XM_021592464.2 mRNA downstream 265569 18353521 ~ 18359012 (-) False LOC110511626
XM_021592327.2 mRNA upstream 152 18633399 ~ 18676639 (-) False LOC110511375
XM_021592358.2 mRNA upstream 152 18633399 ~ 18676639 (-) False LOC110511375
XM_021592371.2 mRNA upstream 152 18633399 ~ 18676639 (-) False LOC110511375
XM_021592396.2 mRNA upstream 152 18633399 ~ 18676639 (-) False LOC110511375
XM_021592398.2 mRNA upstream 152 18633399 ~ 18676639 (-) False LOC110511375
TU264859 other downstream 22706 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 493527 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 494495 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 646672 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1576237 17045025 ~ 17048344 (-) True G229707
TU265301 other upstream 526053 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 908855 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 1014839 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1122957 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1918536 20551783 ~ 20551997 (-) True G233513

Expression Profile