RNA id: XM_021592327.2


Basic Information

Item Value
RNA id XM_021592327.2
length 9577
RNA type mRNA
GC content 0.56
exon number 56
gene id LOC110511375
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18633399 ~ 18676640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACATACAGAACGAAAAAGCTTGGTAGAGTTAAGATGGCGGCATGTGGGTGAGGAGGCTGTAGTTCTAAGCTCGGGATTTTTTGTCATAAAATATTTATATGAATCCTTACATATACAGATATCGAGAAAATAACATTTCCCAGACACATTTGTGTGTTCATTTGGATTGGATCCATGACATCCATACACTTTGTGGTTCACCCGTTGCCCGGGACTGAGGACCAGCTCAATGACAGACTTCGTGAAGTGTCGGAGAAACTCAACAAATACAACTTTAACAGTCATCCACACCTCAACCTGCTGGAGCAGGCCTCCTTAAAACAATGTGTAGTTGGCCCAAACCATGCTGGCTTTCTGCTTGAGGATGGACGTGTGTGTCGGATCAGCTTTGCTGTCCAGCCTGATCGTTTGGAGCTGACCAAACCAGATGGCAACGATGGTTCAAAGTTGAGTGGCAGTGGTTCAGGGACAGGAAGGAGCTCCAGGCCAGGCAGGACTAGTGATCCTCCCTGGTTCCTGTCTGGCTCTGACACACTGGGCAGACTGGCAGGCAACACCCTTGGGAGTCGCTGGAGCTCTGGGGTGAATGGTGGAtcaggtggaggaggtggtggtggtggcggcggtggcagcagcagcagtgtaggAGGTGCAGggggaggaggtgtaggaggagctgtcagtggaggaggtggtggaggctCCTCTGGGAGGTCATCTACAGCTGCCAGGGACTCGAGACGTCAGACCAGGGTGATCCGCACAGGGAGGGACCGGGGCTCTGGTCTCCTGGGCAGCCAGCCCCAGCCTGTCATCCCTGCCTCGGTCATCCCAGAGGAACTCATCTCCCAGGCTCAGGTGGTCCTCCAGGGGAAGTCTAGGAGTGTGATCATCCGGGAGCTCCAGAGGACCAACCTGGATGTCAACCTGGCTGTCAACAACCTACTGAGCAGAGACGATGAGGATGGTGACGATGGCGATGACACAGCCAGCGAGTCCTACCTCCCTGGAGAGGACCTGATGTCCTTGCTGGATGCTGACATCCACTCAGCCCACCCCAGTGTCATCATCGATGCTGACGCCATGTTCTCTGAGGACATCAGCTACTTCGGCTACCCCTCCTTCAGACGCTCCTCCCTGTCCCGTCTGGGCTCCTCGCGAGTTCTCCTTCTTCCCTTAGAGCGTGACTCAGAGCTGTTGCGTGAGCGCGAGTCTGTGTTGAGGTTGCGGGAGCGAAGGTGGCTGGATGGGGCCTCGTTTGACACGGAGAGGGGCTCCACCAGCCGCGAGGGGGAGCCCAGCCTGGACAAGAAGAACATCCCCGTccagagccctgtctctctgggcgAGGAGCTGCAGTGGTGGCCTGACAAGGATGGTGTGAAGTTTGTGAGCATCGGGTCCTTGTTCTCTGAGCTGGTGGCAGTGAGCTCTAAGGGGGAACTCTACCAGTGGAAGTGGAGTGAACCAGaaccatacagaaacacacagAACCCTTCTATCCGCCACCCCCGGGTGTCCTTCTTGGGCCTGACCAATGAGAAGATCACCCTGCTGTCTGCTAACAGCATCAGAGCCACCGTGGCCACAGAGACCAACAAGGTGGCGACCTGGATGGATGACACCCTGAGCAGCGTGGCATCCAAGCTGGAACACAGTGCCCAGGCCTACCCTGAGCTGCAGGGGGAGCGCATCTTGTCTCTGCACTGCTGTGCCCTCTACACCTGCGCCCAGCTGGAGAGCAGCCTGTACTGGTGGGGTGTTGTGCCTTTTAGTCAACGGAAAAAGATGCTTGAAAAGGCTAGAGCCAAGAACAAGAAGCCAAAGTCCAGTGCCGGCATCTCCTCAATACCCAACATCACCGTGGGAACGCAGGTGTTTGTGTCCTCTCTCCAGGTGTGCCTGAGGAATAACCCCCTCTACCACGCCGGTGCCGTTGCCTTTTCAGTCAACGCTGGGATCCCCAAGGTGGGACTGCTCCTTGAGTCTGTCTGGAACATGAACGACAGCTGCAGGTTCCAGCTGCGATCACCAGAGAGCCTCAAGAACATGGACAAGACCACCAAGACACAGGAGATCAAAACGGAGAGCAAGCCGGAGTTGGTAAAGACTGAGATGGGCCCCCCTCCTTCCCCGGCCTCCACCTGCAGTGACACCTCCTCCATCGCTAGCAGTGCCTCGCTGCCCTACAAACGAAGACGCTCGACCCCGGCTCccaaagaggaggagaaggtgaaCGAGGAGCAGTGGCCACTCCGGGAAGTGGTGTTTGTGGAGGATGTTAAAAATGTCCCTGTGGGAAAGGTGCTGAAAGTGGACGGTGCGTATGTAGCTGTGAAGTTTCCAGGGACATCCAGCAGCGTGAGCACACAGCCGAGTCAGACTAGTGCTCCAGCTCCCATCACTGACTCTGACCCCTCCTCACTGCTGCAGGACTGTAGGCTGCTCAGAATAGACGAGTTACAGGTGGTAAAAACTGGTGGAACTCCAAAAGTTCCAGATTGCTTCCAGCGTACACCTAAAAAACTCTGCATCCCAGAGAAGGCTGAGATTCTGGCTGTGAATGTTGACTCCAAAGGAGTCCACGCAGTGCTGAAGACTGGTAACTGGGTGAGGTACTGTATCTTTGACCTGGCCACAGGCAAAGCAGAGCAGGAGAATAACTTCCCCACCAGTAACCTGGCCTTCCTGGGGCAGAGTGAACGCAATGTAGCAATCTTCACCGCCGGACAGGACTCCCCAGTCATCCTTCGTGACGGAAATGGCACAATTTACCCAATGGCCAAAGACTGTATGGGCGGGATCCGAGACCCTGAGTGGCTGGACCTGCCGCCCATCGCCAGCCTGGGCATGGGGGTGCACTCCCTGGCCAACCTCCCCACCAACTCAACCATCAAGAAGAAAGCTGCTATTATCATATTGGCTGTGGAGAAGCAGACGTTGATGCAGCACGTGCTGCGTTGTGACTTTGAGGCCTGTCGTCAGTACCTGGTCAACCTGGAGCAGGCTGTTCTCCTGGAGCAGAGTCCCCACGTTCTCCACTCCTTTCTGGGCCACCGCTGCGACGGCAACCGCAACATCCTCCACGCCTGTGTCTCAGTCTGCTTCCCCGTCAGCAACAAGGAGACCAAGGAGGAGGAAGAAGCTGAACGGTCTGAGAGGAATACGTTTGCAGAGAGACTGTCAGCAGTGGAGGCCATCGCCAATGCAATCTCTGTGGtgtctagcaacagctctgggaACAGGACGGgctcttctagcagcagaggGCTGCGTCTGAGGGAGATGATGAGGCGCTCTCTGAGAGCAGCAGGGCTTGGTCGTCACGAGTCCGGCCCCTCCTCCAGCGACCACCAGGACCCTGTGTCCCCACCCATCGCCCCTCCCAGCTGGGTGCCTGACCCCCCTCCCATGGACCCAGACGGTGACATAGACTTCATCCTGGCCCCTGCAGTGGGATCTCTCACCACAGCCTCAACAGGGACCAGCCAGGGCCCCAGCACCTCCACTATACCAGGCCCCTCTGAGTCTTCGGTGGTGGAGTCTAAAGACCGCAAGGCCAACGCCCACCTCATCCTCAAACTGATGTGTGACAGCATGGTTCTCAGGCCACACCTCCGCGAGCTGCTCTCTGCCAAGGATGCCCGTGGAATGACCCCGTTCATGCTGGCAGTAAGCGGGAGAGCTTACCCAGCTGCCATTACTGTTCTGGAGGCTGCGCAGAAAATAGCCAAGGTGGGAGACCCCGGCATGACTGAGAAGGTGGATGCAGACTCTGTGTTCATGGAGATGATTTGTCCCTCGGGGACCAACCCTGACGACTCTCCTCTCTACGTCCTCTGCTGCAACGACACCTGCAGCTTCACCTGGACAGGCGCTGAACACATCAACCAGGATATCTTTGAGTGCCGGACCTGTGGCCTGTTGGAGTCTCTCTGCTGCTGCACTGAGTGCGCCAGGGTGTGTCACAAAGGACACGACTGCAAACTCAAGAGGACCTCTCCCACTGCATACTGTGACTGCTGGGAGAAGTGTAAGTGTAAGACGCTGATCGCTGGACAGAAAGCTGCTCGCCTGGACCTGCTGTACAGACTGCTCACCACCACTAACCTGGTCACCAGTCCGAACAgccgGGGGGAGCATATCCTTCTGTTCCTGGTGCAGACTGTTGCTAGGCAGAGTGTGGAGCACTGCCAATACCGGCCCCCTCGCATCAGAGAGGACAGGAACCGCAAGGCTGCCAATGCTGAAGACTCTGACATGCCGGACCATGACCTGGAACCTCCACGCTTCGCCCAGCTGGCCCTGGAGAGGGTGCTGCAGGACTGGAATGCTCTCAAGTCCATGATAATGTTCGGATCCCAGGAGAATAAAGACCCGCTGAGTGCCAGCAGCCGTATCGCCCATCTTCTTCCAGAGGAGCAGGTGTACCTGAACCAGCAGAGTGGCACCATCCGCCTGGACTGCTTCACACACTGCCTCATTGTCAAGTGTGCCCCTGACATAACATTTATTGACACCCTACTGGGGACCTTGGTGAAGGAGCTGCAGAACAAGTACACTCCTGGCCGGAGAGAGGAGGCCATCGTCGTCACCAGGAGGTTCCTGCGCTCTGTGGCCAGGGTGTTTGTCATCCTCAGCGTCGAGATGGCTTCATCCAAAAAGAAAAATAACTTCATCCCCCAGCCCATTGGGAAGTGCAGGCGTGTGTTCCAGGCCCTTCTGCCCTATGCGGTAGAGGAGCTGTGCAACGTGGCGGAGTCCCTTATCGTGCCTGTGAGGATGGGCATCGCCCGGCCCACCGCCCCCTTCACCCTGGCCAGCACCAGCATCGACGCCGTGCAGGGCAGCGAGGAACTCTTCTCTGTGGAACCTTTGCCACCGAGACCCTCCCCAGACCAGTCCAGCAATTCTAGTCAGACTGCATCGTCCTACATAATCAGGAACCCCCAGCCTCGCCGCAGCAGCCAGTCCCAGCCGGTCAGAGGGCGAGACGAGGAGCAGGAGGACATTGTGTCTGCTGATGTTGAAGAGGTGGAGGTTGTCGAGGGCGTTGCCGGGGAGGAggatcaccatgaagaccaggaggaacagggagaacagggagaggagaacactgaggcAGAGGGACAGCATGATGAACATGATGAGGATGGAAGCGACATGGAGTTGGATCTGCTGGCTGCCGCAGAGACTGAGAGCGACAGCGAGAGTAACCATAGCAACCAGGACAATGCCAGCGGGCGGAGGAGTGTTGTCACCGCAGCAACTGCTGGCTCCGAAGCAGGTGCCAGCAGTGTCCCTGCCTTCTTTTCAGAGGACGACTCCCAGTCCAACGACTCGAGCGACTcggacagcagcagcagccagagTGACGACGTGGACCAGGAGACGTTTCTATTGGATGAGCCCTTGGAGAGGACCACCACTGCCTCGCACGTCAACAGTGCTGCCCAGGCGCCACGCTCCATGCAGTGGGCTGTACGCAACACCCCCAGCCAGAGAACCACGGGCAGCGccccctccagctcctccaccccCGCTGCAGCGAGCTCCACCGGTCTGATCTACATCGACCCGTCCAACCTGCGGCGTAGCAGTGCCATCAGCACCAGCGCGGCCGCTGCGGCTGCAGCTCTGGAGGCCTCCAACTCGTCCAGCTACCTGACGTCAGCCTCCAGCTTAGCCCGGGCCTACAGCATCGTCATCAGACAGATCTCTGACCTGATGAGCCTCATCCCCAAGTACAACCACCTGGTCTACTCCCAGTACCCTGCTGCAGTCAAACTCACCTACCAGGACGCTGTCAACCTGCAGAACTTTGTTGAGGAGAAGCTGATCCCTACGTGGAACTGGATGGTGTCCATCATGGACTCTACAGAGGCTCAGCTGCGTTACGGCTCGGCCCTGTCCTCAGCAGGCGACCCCGGACACCCATCCCACCCCCTCCACGCCTCGCAGCACTCCGCCCGCAGGGAGCGCATGACCGCCCGCGAGGAAGCCAGCCTCCGCACCTTGGAGGGACGGAGGTCTGGGCGTGCGGCCACTCTGCTGACAGTGCGTCAGGGGATGATGTCAGCCCGGGGTGACTTCCTGAACTACGCCCTGTCTCTGATGCGTTCCCATAATGACGAGCACTCTGACGTTCTGCCTGTGCTGGATGTGTGTTCTCTCAAACACGTGGCCTACGTCTTCCAGGCCCTCATCTACTGGATCAAAGCCATGAACCAGCAGACAACTCTGGACACAACACAGATGGACCGCAAGAGGAGCCGAGAGATTCTGGAACTGGGACTGGACAATGAAGATTCTGAACATGAGAATGACGAGGACACCAATCAAAgctCCACGCTCCAGGATAAGGAGGATGACCCGGTCCCTGCTGAGACGGGGCAGAATCACCCGTTCTTCCGGCGCTCTGACTCCATGACCTTCCTGGGCTGTATCCCCCCCAACCCCTTCGAGGTCCCCCTGGCTGAGGCCATCCCCCTGGCAGACCAGCCTCACCTCCTGCAGCCCAATGCAAGGAAGGAGGATCTGTTTGGCCGGCCTAGTCAGGGCCTGTACTCGTCCTCGTACACAGCAAGCAAAGGCCTGGCCGAGTCCACCCTGGACCGCAGCTGTATGGAGGTTAACATGGGCTCCTCTCAGATCCTACCCACCAAGATGTCCTACTCAGCCAACTTGAAGAACGTGATGAGTATGGAGACTAGTCAACGCGGCAGAGAGGACCAGCCCATGGACCAGGAGCTAGTGGCTCCAAAGCCAGGCCCCTCACCCCATGACCTAGCTGCCCAGCTGAAGAGCAGCCTCCTGGCTGAAATAGGCCTCACTGAGAGTGATGGCCCCCCGCTCCCTTCCTTTAGacCCCACTGTAGTTTCATGGGGATGGTGATCTCCCATGACATGCTGCTGGGCCGCTGGCGTCTGTCTCTGGAGCTGTTCGGGCGCGTCTTCATGGAGGATGTTGGAGCAGAGCCTGGATCGATCCTGACCGAGCTGGGGGGATTTGAGGTGAAGGAGTCTAAGTTCCGCCGGGAGATGGAGAAACTCCGTAACCTCCAGTCCCGTGACCTGGCCCTGGAGGTGGACCGTGACCGTGACCAGCTGATCCAGCAGACCATGAGGCAGCTCAACACCCACTTTGGCAGGCGCTGCACCACCACACCCATGGCTGTGCACCGCGTCAAGGTCACCTTCAAGGACGAGCCGGGCGAGGGTAGTGGCGTGGCCCGTAGCTTCTACACGGCCATCGCCTTGGCCTTCCTGTCCAATGACAAGCTGCCCAACCTGGACTGTGTGCAGAGCGTCAGCAAGGGCATGCAGGCCAGCAGTACGTGTCATCACGATTACAACTCAAGTATGACATTGAATCTGATGCAGCGGCTGAGGAACAGAGACCGGGAGAGGGAGCGGAGGAGTGGAGGGCTCCGAGCCGGCTCTAGGAGAGACCGAGACAGggacTCGAGGAGACAGCTGTCCATTGACACCCGGCCCTTCAGGCCAGCCTCTGAGGGGAACCCCAGTGACGAACCTGACCCACTACCTGCCCACAGACAGGCCCTGGGAGAGAGGCTGTACCCCCGCGTCCACGCTATGCAGCCGGCGTTTGCCAGTAAGATCACAGGGATGCTGCTGGAGCTCTCCCCAGCCCAGCTGCTGTTGCTCCTGGCCAGTGAGGACTCTCTCAGGGCCAGGGTGGAGGAGGCCATGGAGCTGCTCATTGCACATGGAAGGGAAAATGGTGCTGACAGCATACTGGACCTGGGTCTCCTGGAGGCTCCTGAGAAAGCACAGCAGCAGGAGAACCGTAAGCGTCATGGCTCCACCCGCAGTGTGGTGGACATGGAGCTGGACGACCCTGAAGACGGAGATGACAACGCTCCCCTGTTCTACCAGCCCGGGAAGAGAGGCTTCTACTCTCCCCGGCCTGGCAAGAACACGGAGGCCAGGCTCAACTGCTTCAGGAACATCGGCAGAATTCTAGGGCTGTGTCTGCTGCAGAATGAGCTCTGTCCAATTACCTTGAACAGACATGTCATCAAGGTGCTGCTCGGCAGAAAGgTGAACTGGCATGACTTTGCCTTCTTTGACCCGGTAATGTACGAGAGCCTGCGGCAGTTGATCCGTCACTCTCAGGCTGGAGAGGCAGAGGCTGTGTTTGCAGCTATGGACCTGGCCTTCGCCATAGACCTGTGTAAGGAGGAAGGGGCTGGACAGGTGGAGCTGCTGTCAGGTGGGGTCAACATGCCTGTGACTCCTCTCAACGTTTACGAATATGTGAGAAAGTACGCCGAACACAGGATGCTGGTGGTTGCCGAGCAACCTCTTCATGCGATGAGGAAGGGTCTGTTGGATGTCCTTCCTAAGAACGCCCTGGAGGACTTGACAGCTGAGGACTTCAGGCTGCTGGTCAACGGCTGTGGAGAGGTCAACGTGCAGATGCTCATCAGCTTCACTTCCTTCAATGATGAATCTGGTACAAAGACCTTGGCCCGTATTCACAAAGAATCTCAGAGGGAAAATGCTGATAAGTTGTTGCAGTTCAAACGCTGGTTTTGGTCCATCGTGGAGAAGATGAGCATGACTGAGAGGCAAGATCTGgTGTACTTCTGGACCTCCAGTCCATCTCTGCCAGCCAGTGAGGAAGGCTTCCAGCCCATGCCCTCCATCACCATCAGGCCTCCGGATGACCAACACCTGCCCACGGCCAACACCTGCATCTCGCGTCTCTACGTGCCACTCTACTCCTCCAAACAGATTCTAAAACAGAAACTCTTACTAGCCATTAAGACCAAGAACTTTGGTTTTGTGTAAAGGTTGACAAACATGTTTACCTGTTGTGTAATATTTACCTAGTTACATTTTTGTAGATTTGTTTTTTGTCTATACAATTTTATGGAATtcgaagaaaatacaaaaaatgcaGTCGCTCCCCTGGCGGTTATTTTGTTTGTTGTGAACACAGACGGCTTgttcttattttattttaatttttttagttCTGAAGGTAATATACATTCCTGCATTGGCTTTGTAAAGTTGAAACCCTCTGCTCTATTGGCTTAAACCTTTAGTTCCCAGGAATTTGGCTCGACAGCAAACTGTGCCGAAGCTCAGCCAAAGAGGACCGCAGTAGAAGTATTTAAAAAGttagtctaaaaaaaaaaaacactgtgaTTATGATTTTGTTCCTTGCCCTAAACAGAATACTTACTATCACTGACAGTTCGCTGCTGCCTTGATGGAAAGTCAATATTTTTCTTGTATAGGGGGAGTAGGGAATTTCAAAATAAACTTGGATGCAAATTATCATTTTAGTCCCTTGATTGATGTAGAATGTATTTCTGAATATGGTTTAAATGGATGACCTCACAATAAATGCTAGGCATGCTGATAACCTGGTTTTAGGAATTTTACAAAGACTGCAATTATTTAGATTTGTCGGAATACACCCAAGCATACAATAAAACAGGCCACAAATTCTACTTGACGAGGTGGGCAGCAAAAGTTTGGTTTAAGATATGTGATTCATCATTGGGTATAGTTTTTAATAAAATATACTGGTAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264871 lncRNA downstream 10249 18610508 ~ 18623150 (-) True LOC110503735
TU264856 lncRNA downstream 37903 18594986 ~ 18595496 (-) True G231649
TU264855 lncRNA downstream 40117 18593036 ~ 18593282 (-) True G231648
TU264853 lncRNA downstream 41720 18591471 ~ 18591679 (-) True G231646
TU264826 lncRNA downstream 91028 18542022 ~ 18542371 (-) True G231621
TU264902 lncRNA upstream 4398 18681037 ~ 18681288 (-) True G231677
TU264904 lncRNA upstream 7473 18684112 ~ 18684718 (-) True G231679
TU264912 lncRNA upstream 33453 18710092 ~ 18710295 (-) True G231686
TU264997 lncRNA upstream 138172 18814811 ~ 18815043 (-) True G231753
TU264999 lncRNA upstream 139732 18816371 ~ 18816870 (-) True G231755
XM_021592405.2 mRNA downstream 152 18624581 ~ 18633247 (-) False LOC110511506
XM_021592410.2 mRNA downstream 152 18624581 ~ 18633247 (-) False LOC110511506
XM_021592418.2 mRNA downstream 152 18624581 ~ 18633247 (-) False LOC110511506
XM_021592424.2 mRNA downstream 152 18624581 ~ 18633247 (-) True LOC110511506
XM_021592437.2 mRNA downstream 8972 18612092 ~ 18624427 (-) False laptm4b
XM_021592305.2 mRNA upstream 20698 18697337 ~ 18705226 (-) False LOC110511352
XM_021592313.2 mRNA upstream 20698 18697337 ~ 18706474 (-) True LOC110511352
XM_021592284.2 mRNA upstream 117346 18793985 ~ 18797176 (-) False LOC110511312
XM_021592290.2 mRNA upstream 117346 18793985 ~ 18797187 (-) False LOC110511312
XM_021592293.2 mRNA upstream 117346 18793985 ~ 18797369 (-) True LOC110511312
TU264859 other downstream 31524 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 502345 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 503313 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 655490 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 1585055 17045025 ~ 17048344 (-) True G229707
TU265301 other upstream 482661 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 865463 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 971447 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 1079565 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1875144 20551783 ~ 20551997 (-) True G233513

Expression Profile