RNA id: XM_021592592.2


Basic Information

Item Value
RNA id XM_021592592.2
length 1042
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110511884
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17968009 ~ 17969851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCGTTTAGCGCTCAGCCAATCAGCGCGCCGTCACGCTGAGGTACAGCAGTCGAGCCCTTTCTCTAAAGACAGCAAGTAATAAAATAACAACATTACCAACTGGTTAACATACTCACCGTCACAAAGCGGATAGACCATGTCATACCTTACTTACACGATTTTACTTGCACTGTTTCATCAACAAATTGCGTCAAAAGCGGTTCCTGCCACCGCTGAAAATAACGGAACAAGTGTTTCAAACTCATCCGTGTCTGACTACTTTATGTATTTCGCTTATGGCAGTAATCTGCTGAAGGAAAGACTGCAGCTGAAGAATCCATCCGCGGTTTTTGTTACAACTggcagtttgaagGATCATGTGATTCAATTTGGATACTGGAAGAAAGAGTTCAACAACACAAACTCTTGGCATGGTGGTGTTGCTACTATAGAAGAGTCCAAGGGAGATGTGGTCTGGGGAGTGGTCTGGAAGATGGACAAGGACAACCTCATAAGTTTAGACAAGCAGGAAGGAGTGGGAATAGGATTCTACAGTCCACTAGACGTTACCATTAACACAGACGAGGGAGAGGTCCTCTGTCGAACCTACCAGATGAACAACTTCACAGTTCACCAGACCTCGCCTCCATACAAACAGGTTGTTTGTCTTGGAGCAAAACAAAACGGCTTACCTTTGGATTACATTAAGAAGCTGGAGGCAGTGGAAACCAACGGCTACAGCGGTCCGTCCATTTTAGATGACATCACCGCGTTGAAACCTGCTGATAAAGGAAAAAGCTTGTAGATGGTACAAGAGGAAAGAAGATGAAAGAGAAATCACTTAATGTAACAACCTTAGAGGGAAATTGACATAAGACTCAGTTGTCTAAGTTCAAATGTCCCTGTTGTACTTTTGTGCAACAATCAGCTTAAGTAAAAATGCATTAgagtaaataaaaaaaactaagtGGCACACTGGTATATATTCCCAAATGTTCTGTGTAAAATGTGAGACAGTCATTTTAGATGTGATACCAAATAAATTGAAAAATGAATGACAA

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0003839 gamma-glutamylcyclotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263804 lncRNA downstream 15965 17951682 ~ 17952044 (-) True G230700
TU263801 lncRNA downstream 18353 17949429 ~ 17949656 (-) True G230697
TU263799 lncRNA downstream 29592 17934850 ~ 17938417 (-) True G230695
TU263789 lncRNA downstream 50694 17916923 ~ 17917315 (-) True G230689
TU263612 lncRNA downstream 250575 17714004 ~ 17717434 (-) True G230525
TU263811 lncRNA upstream 576 17970427 ~ 17970665 (-) True G230707
TU263814 lncRNA upstream 3004 17972855 ~ 17973230 (-) True G230710
TU263792 lncRNA upstream 5394 17975245 ~ 17975905 (-) False LOC110505118
TU263794 lncRNA upstream 5394 17975245 ~ 17985544 (-) True LOC110505118
TU263824 lncRNA upstream 18789 17988640 ~ 17988873 (-) True G230720
XM_021592602.2 mRNA downstream 3131 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA downstream 3131 17957248 ~ 17964878 (-) True LOC110511898
XM_021592596.2 mRNA downstream 3173 17957248 ~ 17964836 (-) False LOC110511898
XM_021592611.2 mRNA downstream 20573 17940518 ~ 17947436 (-) True LOC110511923
XM_036970572.1 mRNA downstream 779662 17075513 ~ 17188347 (-) True LOC110503762
LOC110505118 mRNA upstream 5309 17975160 ~ 17977653 (-) False LOC110505118
XM_036970588.1 mRNA upstream 63492 18033343 ~ 18048841 (-) True LOC110511860
XM_021592571.2 mRNA upstream 79895 18049746 ~ 18085029 (-) True LOC110511851
LOC110503747 mRNA upstream 123853 18093704 ~ 18154474 (-) False LOC110503747
XM_021592560.2 mRNA upstream 210639 18180490 ~ 18182783 (-) True LOC110511808
TU262748 other downstream 919665 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1117810 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 1128170 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 2176844 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 2259744 15706234 ~ 15708265 (-) True G228098
TU263791 other upstream 5394 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 123905 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 123905 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 629879 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1189449 19159300 ~ 19282138 (-) True LOC110511176

Expression Profile