RNA id: TU263612


Basic Information

Item Value
RNA id TU263612
length 3351
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G230525
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17644653 ~ 17717434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTATTTCAGGTAAACCAACAATAAACAACATTTACAGAAGGACATTACATCTTCCATAATAACATTACATACAGGTCGTAACAAATAGGTAATGCAACAGCTATTCTACTATTATATCCTAAGTTTCAGTTTATAAAGTGACCGGTAACACTTCTTCTATGTCCGAAACCACTTGTGAAAAATGATGTATTTTCAGAGCatcatacaaaaaaaaaaaatagatacgCAAAGTTAATTTTTTTTTGTACTGTAAAACACAGATTCAGTGTTGAGTACAGCGGGGGTTGCATGTCTGGTTCCAAAACGCCTTTCCCAACATATACTGTACGTCTGCGCAGTTAAGAAACTGACAAGGCcaaaaaatatactgtatgtgtatatatccATATATATTTAATACGAATCCTCTCTTTTATGGCGCAAAGGAGACAAGCGTGACCCTGTATGTACGCAAACATAGTATAAGCGTCACTATTACATTTTACACAAGGCGTTTCACCTCCCCTTTTATATACAGCCTAGTAAGACAGTTTATAACAAAGGATACAAAATGATTAAATATTGACATGTAACTCAAAATATGACTCGAAATGTACACATTCCGTAGCATGACCAGTATAGCAAACAGATCAATCTTAAGCCATTCCCCAATTCAGATTTTAATGGTGTATTTGTAaatgcatttttttaaacatttggaaGTTGACCTTAACAAGGAAGAACCAATGGTAACATTCAAATGATAGTGGGCCCCATTCAATTGTTAATCATTTGGACCGTCACAGTGCTCAATGTGCAATTTCACTACTTCTTTCCCAAGATTTCCCTTCATAGAGAAATGCTTTTAATTCCCAAAGGAGAAAAAAAGAGCTTTCAGGAACTCCAcccacgcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcaggcagtccaatacatatacagtattttcATGTTTATGTGATGTCGCAGGCAGGCGGCAAAGGAAGAAACTTCTGGGACACAAAGGCACAAAATAAAAAGGGGGAAAAAGAAAAGTGaaatgccacacacacagaaagcagGAGAGTAACGTATCAAAACTAATTATTCAGCTGCTTAATACCTCCTGTATCCCATAAAGCCATGCAAGGCCGAGCAGAGCGAGCTGGGCGATGTATCTCAGCAGAGCTCTCTGGTATTAACCCTCCTCTGTCACGCTGCTTTAGTCACATTAAGACGCCACTCTAGAttctcctcccttcctcactACCACAACACAGAATCACTTGTCACACCAGGAATGACACTGAAGTCCTATGAAATCACTTTCTGTATCTGTAGTAGTTTTCCTTAAAAAGTCTGTGCATCATTGGGGTTGGAAACTGGGGTCTGTTGGCCCATACTATGGTTGACAGGGGAGGGCACTGATATTTCTAGTCTGTGCAGGCAAGAGCATGTGATTAAGGACAACACAGGTGCAAAAATGGACATTTTTAATAAGCTGGAATGTACAGTAGGGCAAATATATTCAAAAAGTGCATTCTCAAAAAGCTAATGACACAAGTCGTCACTatcactgtgtttctctgtcgtTGCCTCACCTGCTCTATATCACACCAAACACCACTAGAGATGGTGGGACAATTAAAGCTGTACCATTACATGGACTTGGCCATATGGCGAATCATGTCAAAGCCTTCTACAAGACTCATTTCTTTTtaatgtctcctcctcctcttcctcctccttctccctctatgaTAGACTAGCAGGTGAGGCAGGGGGAAGGAGAAGGACTGTGTGTGGCCAAGTGTCTACAGTATTATACCTGTGACTGTctctcaagtgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatgtctTTCTAAGGGTGTCAATGTGGATTAAGAAAACTAATCTCTCCTGATAGTCAGTGTGTGTCTATGATGTCTAACTCAtaactctcctccccctcctctacttGTGCACAGTACAGGCCATTCAGATTAGTGGTAGATTTCAAATCAATCCATAAAACGGGAACCCATATTCTCCATGTTACTGGTCATTGCTATATTACCTAGCTCACACATGACTAATATGAGCAGGTATTTTTACACAAAACAACACCCAGCTGAAAATCGAACACAAAGACATCTTTGTACCAGTCAATGTAACATAGTACCCAAGAAACAAAAGTATTTGTTAGATCAATATCATGCGATATCATAAAAAGTGCTCCTAATATTTTCATTAACGTGATAGCTGAGACAAACAGACGTTGACGCAATCGTCTAATAACATTTGTGATGACGTCTgaaatacagtacattactggATGGTGACGCTATCAAAGGAcgtgaaggagaagaggattgTCATGGGTCGAAGTAACCAAGAGATCAAAATCCCACTGAGCCTATTGCCATTGTGTTTTACCATCTAGATACAGTGTACAACAGGATGCGGTATAGATAACAGTACCTCATGGCCTACATGGAAGCACCACTGAAGGGTATAGCCCATATTGCCCATATTTTGATGCACACGCAACCACACAGATataacacacccacatacacTGAGACGAAGCACAGCGAATGTACCATATAACGTGACTCTTCACGATGTCATCGACACTCATTGCTTTGTGTGTATGCATCATCTCCAGCAGAGACTAACGGATTATTATCACCAGTATCACTATTACAGTATTAATACCATTGCTCTTATGATTATTATTGATTTGATGCCATTTGACTCTGGCCTGACAGTTACAGAGGAGGAACAGATCAAAGTTAAAGAGAAACATTACCACCGCTTGTCATTCTCAGTTCCAGTTTGTGTTGTGAGTGTGAGTGAAACTGTCCAGtgggtgtgtatctgtgtgtgtgtacgtgtgagtttgtgcatgcgtgcgtgaATGCATGCAAGTGCAGCATGTTTGTgaaagaatttaagctttcttgGAGTCCGTGATATATTTTCTAAATATgagtatactgtacatacaaatatacattctcacataggtagtTAGAAACACAAGCCACAGTATGTATCAATAGTATTGTAAAGACTCTTGATGATTAAGTGTATTGTAAATGTGTCAACGATATATGagtatcacaacattataaaaGTCAACAAAAATGGCAAATTATAAAACTGAAATTGGAGGTGTCACCCACCAAAATGtatacactcagacacacacgcacacacacacacacacacacacagttggaaAGGTAATACGTTAAAGAAACAGAAGGGGGAATGTGATCCCGGTggttcctccatctcagtgtcTTTGTCCTTCTCTCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263608 lncRNA downstream 85190 17627361 ~ 17628814 (-) False G230523
TU263609 lncRNA downstream 85190 17627361 ~ 17628814 (-) True G230523
TU263607 lncRNA downstream 85885 17627361 ~ 17628119 (-) False G230523
TU263548 lncRNA downstream 135536 17527782 ~ 17578468 (-) True G230467
TU263522 lncRNA downstream 234836 17478887 ~ 17479168 (-) True G230442
TU263789 lncRNA upstream 199489 17916923 ~ 17917315 (-) True G230689
TU263799 lncRNA upstream 217416 17934850 ~ 17938417 (-) True G230695
TU263801 lncRNA upstream 231995 17949429 ~ 17949656 (-) True G230697
TU263804 lncRNA upstream 234248 17951682 ~ 17952044 (-) True G230700
TU263811 lncRNA upstream 252993 17970427 ~ 17970665 (-) True G230707
XM_036970572.1 mRNA downstream 525657 17075513 ~ 17188347 (-) True LOC110503762
XM_036970568.1 mRNA downstream 525658 17075513 ~ 17188346 (-) False LOC110503762
XM_036970569.1 mRNA downstream 525658 17075513 ~ 17188346 (-) False LOC110503762
XM_036970570.1 mRNA downstream 525658 17075513 ~ 17188346 (-) False LOC110503762
XM_036970575.1 mRNA downstream 525659 17075513 ~ 17188345 (-) False LOC110503762
XM_021592611.2 mRNA upstream 223084 17940518 ~ 17947436 (-) True LOC110511923
XM_021592596.2 mRNA upstream 239814 17957248 ~ 17964836 (-) False LOC110511898
XM_021592602.2 mRNA upstream 239814 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA upstream 239814 17957248 ~ 17964878 (-) True LOC110511898
XM_021592592.2 mRNA upstream 250575 17968009 ~ 17969851 (-) True LOC110511884
TU262748 other downstream 665660 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 863805 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 874165 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1922839 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 2005739 15706234 ~ 15708265 (-) True G228098
TU263791 other upstream 257811 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 376322 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 376322 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 882296 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1441866 19159300 ~ 19282138 (-) True LOC110511176

Expression Profile