RNA id: XM_036970575.1


Basic Information

Item Value
RNA id XM_036970575.1
length 8463
RNA type mRNA
GC content 0.52
exon number 32
gene id LOC110503762
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17075513 ~ 17188347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgAGTCACTTTCCGTCGCTAGGCTACtcataacctaacgtagcaggcgtaaaGGCTACTCGGAACAGCTCGAACAAGGGAGCGACTAAATGTGCCATTTGGCAAGTGTAGGCTATAGCACGTGCAGCTTAACTAGTACTAGCATTTGGAACTTAGTTAGGGAGTGTATGTTTTTTTATTACGCATATGAGCACTTGATGTTGGTGTGTAGACACTCACTGTATCTTCAATTCAGATTCAACTATAGTTGCATCACATTGGCTACTTTAGACAAGACACCATTACCTTCGTAAGGAAATAATCATCGTTTGAAATGCCATGCGTAATTGCATCCAAGCATCTAAACAGTTGTTATTTACGCTACATAACATGATTTTACTAAACATATAGGCGAATTCCAATATATTAAAAAGCAGCAAGAACTTAATCATGTCTTGAATAGATATTGCTTTGTAAATAATATTTCTATACATCTACAAAACACAGTTGATCAAGAAAGGCACACTCTCGACATAAACAAAATCCCTTCGtgcacctctctcttctctctcttgcatTCTCTAGCATACGTCTCACCCCAGCTCTCTTTGCTGTGGCTTATTCACTTCGGTGTGTCACCCACGAATTGCTACGACTCCATCtccagaagggggaggggggggctgcTGGGTATATGCGTTTGTGACGAATCCCAGGGCTTCAAAGACGAAAACCAAGTCCAGCTCCCGGACAGCAGACACACCCGCAAGGACACTCCAAAACTGGGATGAACGATGGGTGCTGCCTTTAACGCGCGCACTGGAATCAAGACAAAATACCAGGAGCTATCCTGATTTTACGCTTTGTTAGACCTTCACTTCACCTGGCGCCTGTGTCGATCGAAGCCAGCGAAATTTGAGAATAACTTGATGACAAGGCTTCTACCATAAATGGGGATTTAAAAATATAGATTTTGAGAGCATCTCTTCAGAAACAGGGGGACCTTTGAATTTGGATCGACATACTGTTAAAAGCTACATGGACTGGATTTGGATTCATTTTACTCAATGGAACTTCGGAATAACGCAGTTTTGAATTGCAAGTCTTCTCAGACTTGTTAATTTCATCAAAATATCTGCATTCGGCTATACATCGGCTACACATTCTTGAAATAATAACTACAACGAACTTATTTTAATCAAGCTTGTGGAATTGTTGATTGTCCCTCGAAAGCGTTTGAGTTTGGAACACGGAAGATACGCTTCAATGGAATTGTTAACTTTTTCAAGAAATCCCAGATGGAGGTTTCCCGGTATCAGGAGGGAATAACCAGGAAGTCCGGagtcctccaaccaggatttctgggaaaccagggaatttattgaaagttccaggaattttgcaaccctaaaagtTCGTCTGAAAGTCTGGGTCGACTGACACACACAATCATGGACAGATCACTGGACCGCTGAGTGCaatcttcctctttctcctcctccttcctcctcctccttcctcctcctcctcttcctcctcctcctcctcttcttccttcctcctcttcctcctcctcctcttccttctcttcctcctcctcctcttcccccagaGGCTTCAGTGAACACCCTGAAGGTCCCACCTGGTTGCCAGAAAATcagtgagacagaaagacagatcgACGAGAGGTTACAAAAAAACAGAGGTTCCAGCAAACCCCCTCTGGTCTTTCTAATTCATTTGGTAACCATGACGACCACTCTTTTTTCCTCCTTACCTGGGCACCTGGTGAACCCCCAAGTCCCCCTGTCATCATCGTTGCTGCTTTTGCTGCTGTTACAACTGTTTAGTCAGTGCCCTGCTGCTCCCTCAGGGCCTGAGTCAGACACCTGCTCCACTCTGGTTCAGAGCCGATTCTTTGGCcacttcctgtcctcctccacttTCCCCACGGCACCCTGCTCCTGGACCCTGCAGAACCCAGACCCGCGCCGCTACACCATCTTTATCAAGGTAACCAAACCTACCTCCACAACGGACTGCATTCCCCGGCAGCTCCGCACATTCCAGTTTGACTCGTTTCTGGAGACCACGCGCACCTACCTGGGCATGGAGAGCTTCGACGAGGTGGTCAAGCTGTGTGACTCTTCATCCCCTGTGGCCTTTCTGGAGGCTGGGAAACAGTTCCTACAAATGAGGAAAGGGCCGCCCCGGGCCGGCGTGACGGTCACCACCCCTAACGCTAGCGAAGATGGGGAATTTAAGACAGAGTACCTGGTGGTGGGGAAGCGTAACCCCAGCATGGCAGCGTGTCAGATGCTGTGCCAGTGGCTGGAGGACTGCCTGGCATCCAGCACCTCTAACAGGCCCTGTGGCATCATGCAGACCCCCTGTCAGTGCTGGgagccccctcctcctccacagctcAGCGAAGGAGATGGATGCTACAGGAACGGGTTCTATCTGGAGAACTGCCTACCCAGTGCCAATGAGAAGAGTGATACTGACAGCAACAGTGGCTGGAGTGTGTGGGCGGAGTGGAAGGAGTGCAGCAGTGACTGTGGTGGTGGCGTTCAGACCCGGAGCCGTACCTGTCAATCTCCCCCGGAGGAGACATACCTGTGTGAGGGAGTAGTGGAGGAGGGAAGGCCCTGTAACCCTCAGCCCTGCAGTGGCAAAGGCCGTCATCTCACTCGCAGCCAATCACTTCGCTCCGTGGACAGCCGCAAGCGTGATGGCGGCGGTGGCGAGGTAGACAAGACGCGAGGCGGTGGCGGCGGACAGCAGGCCCCACAGACAGtgGACCAGACTGCGTCAGGTGAGGAGTGGTCGTCGTGGAGTGTGTGTTCGGCCACATGCGGTGAGAGCTGGCAGAGCCGCACGCGTTTCTgtgtctcctcctcctacagcacCCAGTGCAGCGGCCCGCTCCGAGAGCAGAGGCCCTGCAACAACTCTGCCGTCTGTCCAGTGCATGGGACTTGGGATGAGTGGTCGCCATGGAGCTTGTGTTCGTCAACCTGCGGCCGTGGTTACCGGGATCGCACGCGCAGCTGCAAGCCCCCTCAGTTTGGGGGAGACCCCTGTATGGGGCCGGAGAAGCAGACCAAGTTCTGCAATATCGCTGTCTGCCCAGTTGATGGGGTGTGGAATGAGTGGGCTAATTGGGGTTCATGCTCTGCGTCCTGCTCCAACGGGACCATGCAGCGGATCAGGGAGTGTAACGGACCTTCGTACGGAGGATCAGAGTGTCGCGGGGAGTGGATAGAGACCAGAGACTGCTTCCTACGGGAGTGCCCAGTGGAGGGGAAGTGGCATCCTTGGACGTCGTGGGTGGGCTGCACCAAGACATGTGGCGGGGGGAGCCAACAGAGACAGAGGATTTGCTATGGGCCCTTCTTTGGGGGTGAAAATTGTCCTGGAGATCGGGAGGAGGTGCGACGCTGCAATGAGAAGCGGTGTCCAGAACCTCATGAGATCTGTGCAGAGGAGAACTTCTCCAACGTAGTGTGGAAAATGACTCCAGCAGGGGACACAGCGGCCGTACGCTGCCCTCCCAATGCCAATGGGCTGATCCTGAGGCGGTGCACCCTGGATGATGAGGGAATAGCCTACTGGGAGAACCCCACTTATATGAAGTGTATCTCCAACGACTACCGCAGCATCCAAACACTGACTCGGGAACACCTGTCCAAGGCCCAGCGAGGGCTTGTGGGGGATGGAGTTTCAGAGGTGATGACCAAGCTCAGGGTGACGTCCAGCGATGGGACCAGCTACAGTGGAGACTTGCTGGCCATAGTGGACGTACTGAAGAACATGACAGAGATCTTCAGACGGGCCTACAACAGCCCCAGCAATGCAGACATGAGAAACTTTGTCCAGTCAGTCAGTAACCTGCTgatggaggagaacagagagagatgggaagaagcACAACTGttGGGTCCTAACATCAAGGAGCTGTTCCGGTTGGTGGAAGACTTTGTGGACGTCTACGGTCTTAGGATGAAAGACTTCCAGGACACGATCGAGGTCACGGATAACTTAGttctgtCCATCCACAAGCGTCCGGTGGCGGGTAATGCAGACATCAGCTTTCCTATGAAGGGCTGGAAGGGGATGATGGACTGGGCCCGCAGCTCTGAGGACAGAGTTACTGTCTCCAAGAACATCCTCTCCACAGGCAAGCCAGATACAGATGACTTGTCAGCGTTTGTCACCGGGATCGTTCTCTACAGAAACCTGGGCAGCATCCTATCTCTACAGAGaaaCAGCACCGTGCTCAACTCCAAGGTGGTGTCTGTGACCATCAAGCCCACCCCAGGATCCCTCTCTACCCCGGTGGAGGTCCAGTTCTCACACCTTTACAACGGCACCACAAACCAGACCTGCATCTCCTGGGACGAGAGTGACAGCTCTTCGCTGCTCGGATCGTGGTCTGCCAGGGGCTGCAGAGCCGTGCCTGTCGACTCATTGAGAACCAAATGCGTGTGTAACAGACTCTCAACCTTCGCCATTTTAGCACGGCTAAATCCTGACATGAACATGGATAAAATGCAGCTTCCCTCTGTGACGCTGATGGTGGGCTGTGGAGTCTCCTCTCTCACCTTGATGCTCCTCATCATCATCTATGTGTCGGTCTGGAGGTACATTCGCTCCGAGCGCTCCGTCATCCTCATCAACTTCTGCCTCTCCATCATCTCCTCCAACGCCCTCATCCTCATTGGTCAGACGCAGACACGGAACAAGgtgaTCTGCACGCTGGTCGCTGCTTTCCTGCATTTCTTCTTCCTGTCGTCGTTCTGTTGGGTTCTGACAGAGGCGTGGCAGTCATACATGGCCGTGACTGGCCGGCTGAGGAACCGCATCATCCGCAAGCGATTCCTGTGTCTGGGCTGGGgtCTACCTGCTCTGGTTGTGGCAGTCTCTGTGGGTTTCACCAAAGCTAAGGGATATGGCACCGTCAACTActgctGGCTGTCTCTGGAAGGTGGTCTGCTTTATGCGTTTGTGGGACCGGCTGCCGCTGTAGTCTTGGTTAACATGGTTATCGGGATTCTCGTATTTAACAAACTGGTGTCCAAAGACGGCATTACTGATATGAAACTGAAGGAGAGGGCAGGggCGTCGCTGTGGAGCTCCTGTGTGGTTCTGCCTCTCCTGGCCCTCACCTGGATGTCTGCTGTCCTGGCCATCACCGACCGACGCTCCTCCCTCTTCCAGATCCTGTTCGCTGTGTTTGATTCGCTGGAAGGCTTCGTCATCGTCATGGTGCATTGCATCCTGCGCCGAGAGgttcaagAGGCAGTGAAGTGTCGGGTAGTGGACCGCCAGGAGGACGGGAATGGAGACTCAGGGGGATCTTTCCAGAACGGACACGCTCAGCTTATGACTGATTTCGAGAAAGACGTCGACATGGCTTGCAGAGGAGGTAAGAGTACCGGCAAAAAAAAGAgTACTCTGAAGCGTTCCTCTCTCCAGGGTGATGAGAAGCCATCCTCCCAACCCCTGACCCTTCAGAAGGGCTCTAACTTCAACACCATGCCTGCCAGCATGGCCAAGGTCCACCTCCAGAATGTGGCAGACTACCCCAGTCATACTCTCACCCTGCGCAGGGAGAAGGGTGGCGCCACCAAGGGCATCAGCACCGAGCTGCCGGGAGCCAAGTCCATCTACATCTGTGACGGGGAGCTCTTTAAACAGCTGGACGGGGAGCTGTCTCCACGGGGGACAGGGGAGGCCGGGGGGCCTGAGGGCACAGGGTACATCATCCtgcctaacaacaacaacactggcACCCTGGGGCGGCCCGGAAAGGGCAGCAAGGAGGACACGACGGCCAAGTACAACATCAGCATCGAGCAGCAGATGCCCCAGACCAGGCTCATCCACCTGGCCAACTCGGCGGGGGTGGAGGGCGTCCCAGGTTTCGCGCTGAAGAGCCTGCCTGCAGACCTGGTCAGTGTCTCCTGCTCGGAGAAGGAGTCGCCCGTCCACAACATGCAGAACGTCTCCGGAGAATCCCACATGACCAACAGCATGTGTGAACAGGGTGATTCTGGTAACTCTGGAATGATGTCCAAGAGCGAGACCGTGTCCACGCTCTCCATGAGCTCCCTggagAGACGAAAATCTCGCTATGCGGAGCTGGACTTTGAGAAGATCATGCACACACGGAAGCGTCACCAGGACATGTTCCAGGACCTGAACAGGAAGATCCACAGTGCAGACCAGGACAGGGCGTCTCCGCCTGGCGATGGGAAGGCAGGGAAGAGGTGGAGTGTGTCCTCAACAGGCAGCGACAAGACCATCATGAGTGACAAGCAGCAGACACCCAGTAAGAGAGCCTGGGAGGGCATCAGGAAGACCCAATCTCCCCCGTCGTGGATGAGGAAGGACCTGGAGCCCTTGGCGGCCTCTCCCCTGGAGCTGCAGAACGTGGAGTGGGAGAAGGCCAGCGCCACCATCCCTCTGGTGGGACAGGAGCTCATGGACCTGCAGACAGAGGtgtgagactgagacagagagacagacggagagagagcagCCAACCCCGTCCCCCAGCCCagctctcagacagacagacaccttccCTTCCCGAAGCTCCACGTCTCAATCTCACTCTGAGAACCAACGACCAAATGATTAATGACCAACGAAACGGGCaggggtgagtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagctcctTTATGTTAGGACCCAACTAAGAGAATGAGAAAATGGGAAgacatacagaaagagagagagggagagagagagagagagagagagagagaagctcctTTATGTTAGGACCCAACTGACAGAATGAGAAAATGGGAAgacatacagaaagagagagagggagagagagagagagagagagagagagagagagaacaattgCCTGTTAAATGGGGGGGAAGAGAACAGGTTTGCAGTGCATTTTGTTATATGTTCTTATTGCTGCTGGAATCAGTTTTTTGTTTACTATGTCAGACAGTCATATATCTGGTCTGTTATTATCCACATTATTACTTCACTGGACACATACTtgagtccctctctcctcctggtaGATCTCTGTGGAGGGTTAGCCAGTTTGGCAGTTGGGTGGTGTAGGTAGTGTAGGTTAAAAGGACAGACTGCAACTGCCTATGGACTCTTCACCAGCCTGCTAACAGATCACCTGGACCAGCCATACAGTTCATGTTCCAACCAAGCCTTTAGGCAATGGACCTGGTCTGGACAAGACCTTCacccaacatacagtacatgttccAACCAAACTACATGTCCAGTACATGTCCCAAACACGCCTAGGCAGTGGAGGAGGCAGACTGCTGGACCATAACCATGTGCCTCTCCATGCCAACTAAGAGCCCCGCCCCACCCTCCACTGCACTGTCAGACAGAGTCCACACCCCCTTGACAGGAAGGGAGCAGATCGATGACATCAGCCAGCCAAAAGGGTGGAAAACCCTTCCATTGGTGGGTACCATAGTGACATCAGCATAGACCAACAAGAATGAGATATCTCATTTGCGGATGCCCTTAATGACATGACTGAAAGCCAAGATGGCCATATCTCATTGGTGGAAGCCTCTATGACCTCAGCAGAAGCCAAGGAGACACTGTTTTGATTGGTTGACTGATTGCTTGATGTACGAGCAGGCTTGGTACATTTGTGGCAAATTTTATTCTGCTTGTTCAGCAAATGCAGGTGGTAAAAAATGAAGGACACTCATGTCACAAAGTATATAAAGAATTATGCTTAATATTGACAATGGAAatgaataaatataaaaatatatatgataAATACTGTATAGGACATGACAGAGGTTGTGACTCTGCAGTATGGGGTTAGGATTAGTTGCACACAGAGAAAGCACAAGGCTCTTTTGGAGTCCTGTTGTACAGCAATGTAATTACTTCAACAGAGTTCTACAGAATGAATTTTAGCCTATAAATATCTTTCTTACTGTGCTTGGGGATTATTGTTGTCATTATTATAATTATGACCATGATTATTCAGATTACATCtgcgtccgaaatggcaccctattccctatgtagtgcactgcttttgaccaggtcAAATGACAGGAATTAACACCAggttaaaagtagtgcgctatatagggaatagggtgccatttcgaaCACATATTATGATTCCCCTCCCATCCTTTTCAGGGTACTGGAATATGAGTGTTCTGTAACTCCATGTAACAGTGTGTGTTTTGGTATCACTGACTGTCACTCCCTCCTCAGAtctgtacctgtctgacatgaaCCCTGACCTCTGTCCCCTGACCTTTAACCTCCACCGCCCCTCCACCTTTTTAGTTCACAGGGGTTGACTCTTTGTTAATGTACAGTTTTCAGAGCACAAAATGAATGTGTCATATTTCTAataaaaatatatctatataataaACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262750 lncRNA downstream 29194 17045463 ~ 17046319 (-) True G229709
TU262745 lncRNA downstream 30102 17043792 ~ 17045411 (-) False G229707
TU262746 lncRNA downstream 30102 17044695 ~ 17045411 (-) False G229707
TU262743 lncRNA downstream 32593 17041094 ~ 17042920 (-) True G229705
TU262742 lncRNA downstream 34678 17040091 ~ 17040835 (-) True G229704
TU262818 lncRNA upstream 2606 17190951 ~ 17191207 (-) True G229777
TU262946 lncRNA upstream 60371 17248716 ~ 17249318 (-) True G229901
TU263015 lncRNA upstream 150973 17339318 ~ 17341083 (-) True G229964
TU263020 lncRNA upstream 160697 17349042 ~ 17349266 (-) True G229969
TU263027 lncRNA upstream 173572 17361917 ~ 17362226 (-) True G229976
XM_036970564.1 mRNA downstream 249403 16805002 ~ 16826110 (-) False cep162
XM_036970565.1 mRNA downstream 249403 16805002 ~ 16826110 (-) False cep162
XM_036970566.1 mRNA downstream 249403 16805002 ~ 16826110 (-) True cep162
XM_036970567.1 mRNA downstream 249405 16805002 ~ 16826108 (-) False cep162
XM_036970556.1 mRNA downstream 653536 16195901 ~ 16421977 (-) True LOC110512031
XM_021592611.2 mRNA upstream 752173 17940518 ~ 17947436 (-) True LOC110511923
XM_021592596.2 mRNA upstream 768903 17957248 ~ 17964836 (-) False LOC110511898
XM_021592602.2 mRNA upstream 768903 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA upstream 768903 17957248 ~ 17964878 (-) True LOC110511898
XM_021592592.2 mRNA upstream 779664 17968009 ~ 17969851 (-) True LOC110511884
TU262748 other downstream 27169 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 225314 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 235674 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1284348 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1367248 15706234 ~ 15708265 (-) True G228098
TU263791 other upstream 786900 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 905411 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 905411 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 1411385 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1970955 19159300 ~ 19282138 (-) True LOC110511176

Expression Profile