RNA id: XM_036970567.1


Basic Information

Item Value
RNA id XM_036970567.1
length 6501
RNA type mRNA
GC content 0.52
exon number 27
gene id cep162
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16805002 ~ 16826110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTTTGGAAAGGTACAGGTGGGGAGCCTCCTGTCTTACCAGCAGCCTCCAATCACTACGTGACCATAGTTCACCATAAGGAGACACCACCATTCCCTTCACTGCCCCTGGATGGCTACAGACTGGAGAGCAACTTTCAAGGCTTCACATAGTCTCTTCGGGTGAGAGAATACATAGAGATCCAGTGGTGTTCTCACTAATTAGAGAAGGGTGACTGGTACTACTTTTGTGTACATGCAAAATAAAGTTCTTAGGCAGGAAAGACTAAATAACAAGGGACAGGCTCCTTTATCTTTAAATTAATTTAAGAGAAACAAACCAATATCAGTGTCTTTGCAATTAATTAATCATTTAAAATATTCAGTTACATTTTTCTGTTCTCTTGTCACTGTAAATAAAAACTCTTAACATTTTGTTTGGAGGATAAGCAGAGGTGTTTTATCAATAAATGGACTACAGGGTGTTAGACAATGTGGATGGTCACAGCAAAAAAAAGGACAGATACATTGCAGTAGTAGCTCATTGCTCCTTGGCCCATGCCTTCACAAGAGGCCCACACTGGTAGTTTTGTAAGAAGGCAAGCCACAGCCCAGGTGCAGTTGATGTTTCCCATCAGTGACATGAGGATATCCTTGACATGGTAATATTCCACTGGAATAGCAAAGGTACTGCTCCCTTCTTCAGACGTCGAAGCCCACTAGAAGGTTCAATGAAATCTTATTTTCCTAACTTTCAATAAAGATGCCGCACCAATCTAATAACGTTAACGTCGTTAGCACTAacttttgctagctagctaaagagaCAGAACACAATCGAATTACAAAAATCACTAACTGAACAGATAAACTGAATTTTCAACAAGAATGATAAACGCTATATAAATATGATTTTATTAATATACTGAGGTAATGATAAAAACTAGGCTAGTACTGTACGGCTACAATCAAGCTTACAGGAAGCTATGTATCGGGTAGGAAGTTGAGCGGAAGTGGGCGTTGCTACGCTGTGCAAAAGGTCTATTAGTTGAAACTTAAACGTCTGCACATGAATGTTTTGCTCATCGATCCTTCAGAAGGAACAAACTTTCAGATTGACACAGACGGGAAATATGACAAAGCATTCCCGCGCTAAATAATAACTTTTCTGATGCGTGAATTAATTATGAATGGACGGATTTTAAAGGGGAAATCGAAATACGAGCGATCAGAAGGATAATGGTGATTGGTCATTCTGTTATTGCGTCTGAATAGCCAACCAATGGGCTTAGAGGTCTCACCCGGTTGTTGTCGCGGGAACTTTATGGAGCTATGAACACAAAACACTTGTTAGCTGCTACTGTAGTGTAACAGTTTGTAAACCACCAGCCATGCATGTGTAGCTGGTTATACATGCATCACACTGACTAAATATTTCGGTGGAGTGCAGATAAGATAGCTAGCTAGAAGACACTGTTGCCAGCTATAGCTAGGTGGCTTACGCTTACTTAACTAAGCcagctagctaggtggctaacgctaacTAAAGCCAGTTAGCTAATCAGCTTAGATAGCTAGTtaccatgctagctagctacaaccaAATCCTTTTTATAACTGCTACAACTGTCAAGGCTAGCTACCTAGCGAAATACACTAGCTAAATAAGCAAGCTCGCCAATATTGTGAAAAACTACATCCACGTTGGTTGCCTAGGTAACTAGCTAGTTAGGAAGTTAATTAAAGGTTGAATCGCAAACGTCTCACTATTATTATCCTGCCACTGTTATCCTCCCATTTTTGGGGGGCAAGATACAGGTAGCTACCCTAGCTACTTACAGGTAACTAGCTAGTTACTTATCATCTTTGACTGGAATCATGGCACATCGACTGACGAAAGATGAGCTTGATGAACAGTTCGAGCAGTTTTTGAAAGAGTCTGTCTCAGATGACTCAGTGGATTTGGGTGGCAGTGCTATGCGCTCCAGTGTTCTGGACAGCTTGGGCAAAGCCTCTCAGAAACCACCACCAAAGAAGACATCAGCTGCCCCTGTGCCGTGGTGGCAGGAGGATGACAGCGAAGAGACACCTGGCAGAGGATTGCTGAGATCTGAGAAGACGTTCTGTAAGTCTCTGAGAAGATCCCAGCCCAtccaggaggaggaagaggagctgcagcatcagggagtagagaggggttcggaggaggaggagggggcagagcCTGTCATCTTCAGCAGAGACAGTCTGGAGCCTGAGGACTCTGTGATGGCATCCGGACCAGGTCAGAACGCTGCAGTGGGTCTTGGTCTGGGAATGGACAgcctggaggaggaagaggagaaggccCGCTTCTTTGCCCACCTGGAGGGAGGTGCGTCCTCCACCATAGACTACTCCAGACTCAACAAAGATCTGGATTCCACCAGCGCCTCCACCACCGCTACCACCCTCAGGAAGGCAGAGGCGGCTGTGGCTGGTGTCGAtcagagagcggaggagagagctATGGAGTCTGACCGACTCTCCCCAGCCTCCCCCCACTACAGTGAGGATGAGGACTTTGAAGATGAGGTCATTGAGGAGGAGCCTAAAAGGCCTGCCATGCTCACCAAAGTGTCCCTCCATGATTCTCTGGACTCGACCGGTGAACTCCTGCCCCCTGGAGCGGACAGTGACACCAACGAGGAACCAGGGAGGAACCAGGGAGCAGAGTCCATAGAGACGGCACTACCAGCCCAGTCGTATGGCCAGAGTGGGGCCAGTGAGATGGAGGCTCTACAGGAGGCCTACAGACAGATCAGTGGCTCTCTGGAGGACTCAGACCATCATCACCACCCTTCATCACCagtcaggagggagaggaggaggaagagcaatcctgttcctgtctctccctctgtacctgagctctccAGAGGAACACTACTAGCACCAGTCTCCACCACAGAGTCAGAGCTGCCCACTGCAGAGGAGCTGATGCGTCCCATCCGACCAGACAGCATAGATGACACAAGAGGCTTCACTCTGCAACCTGCTAGTGGGACCCAGTTCACCCCAGAGAAGACTGGCCAGTCCTTATGCCATAGATCCCGTAAGTCAAGCCCAAGACGCTCAGCAGAGCCAGACACTCCTCCGGCCTCCCCAGGCCCCTGTCCCAGAAGCATCAGAGAGGAGGTACAGAGGCTGATGAAGCAAGATCAGGACAGCTCCTCCCCTGACCTGACTTCCACTAACCCCAGCAACAAGAGAAGCCAGCAGGTTCCTGGACGCTCTACGGTAGCTGGTCCCTTCACATCCTCGTTGAGGAAGCCTTATGTTGCCCCTGGCAGAGGTAGAGTGGAGAGTAAACCATCAGCCGTGGCCACCAGGACCTCTGGAGCAAGGAAATCTGGTCCTACCAGACCGGTGGCTGTAGCCaagcctccctctcctctaacccAGAGGAAGCCTCTCAGCCAGACAACATACCAGAGCCTCAGCCCCCTCCTCTCAGAGACAGATAAAGACTGTGGTGGTCTGAGGGTGAGCAGTGAGCTGGTGGCAGGGGTTCAGTCCTTCGCTGCCTTCCTCCAGCAACAACATCGGATGGAGACGAGAGGTCGCCAGGATACCAGTCACACGGTCTCCTGGGAAACCAAAGGTCAACAGGAAGCCAGCCAGACTCAGACTGAGTGTCCATCAGAGAGGAAAagtgagcCCAGGGAGGAGGGCAGGTctggggaggtggaggagagccCCCTAGTGTCCAGCCTGAGACTGCAGCTagcccagagggagagagagctccACACCAGAGAGGAAGAGCTACTGCTGCAGTATGACACAGAGGTCAGCTCACTGAGACAGGAGAACTACCTCCTGCAGAGCAAGCTGCACAGTACAGAGGAGGCCAACAGCAGGAAGAAGGGCCGTTTGGGTCGCGGTCTGGACGGGCCCTTGGACCCCCTCACGGAGGACAAACTCAGACTGATAGAGAAAGAGGTGAAGGAACAGGAGACCATCATCCAGGGATACCAGCAGGAGAATGAGAAGTTGTACCTGCAGATGAAGGCTCTTCAGGCTCAGAGTAAACTCAATGAAGAGGCCATGTTCACAGAGAACCAGAGGCTGCTAAACGAACTGGCCCTTACCAAGGAGCAGATGAGCAACTCGCCGAGGACTGTGGGTAATGTAGGCTGTGTGGCCCATATTCAGCGCATCACAGAGCTGCTGGGCCAGATGCAGGCAGCACAGAGAACTGAAGAGAGACTAGTGGAGGAGACCCACAGGCTGAAGCAGGAGAAACAGGCCCTGGAGGTGGACCTTGAAAtgatgaggaaagagagagacctgGCCAAAGCGCAGGTCGTCTACACCTCAGGGGATAAGAGCTTTGAGCTGCAGGTGGCAAAGGACAGGCataaggaggaggtgtgtgttctgaaGAAGAGGCTCCAGTGGTATGCTGAGAACCAGGAGCTGCTGGACAGAGACTCTGCCAGACTGAGGGCTGCCaccgcagacacacacaaactcacagagcAGGTGGAAAAGCTGAAGatggaggtggggaagagagccAATCAGAATAAGACTAAAGAGAGAGCTGGAGACGCTAAGAGGATACAGGACCTAGAACGACAGGTGAAGGAGATGGAGAAGATTCTCAGACAGAGGAACCCTAACTCCCTCCCAGCGCTCATCTACGCTGCAGCCAACGCACCTGCAGTGGATGAGGATGGAGGGGCCAagagctccccgcccactcagaccagggccctattgGAGCGGCGCATCCAAAGGCTGGAGGCGGAGCTAGAGAGCCGTGATGACGAGGCCAAACGCAGCCTCCGAGCCATGGAACAGCAGTACCAGCGGATTAAGcTCCAGTATGAGCAGCAGATCAGTGATCTGGAGCAGCGGTTAACCCAGAAACACCCGGTCCAGACCGGGTCACCTGGGGTCTGGCAGGCCCAGGTCTGCTCCCTGCAGCAGGAACTGGAGCTTCTGAAGGAGAACCATCAGAGTAGAGGGAGAACCCTACAGGCTGAGGTCCACTCCCTACAGGAGCAGCTCACACAACAGGCACAGtctACCACCGAGCCAGAGAGAGCCCCCCAACGCAGCCCGTCCCGACACCAGCGCCAAGCAGAGACGGCCTTGGGGGTCCGGATAGAGAGACTCAACCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGAGCCGCACCGTGGAGAGACtccagagggagaggaagaccaTGCTGTGTGGCCCTGGCCCCAGATCAGAGGGCCGTGTTGGGCCTGGGGAGGCCAGGCGGCAGGCGGCCGGATCCAAAGGACCCATGGTGGTGGCTACcccaggggagaggggaggcacAGTGGGAGAGACTGCAACCTTCCCTCCCACTCAAGATGAGAAGGACTACCAGCCCACAGCGTTCTCTGGGAGCCACATCTCAGAGGTGCTGCAGGAGAGTGAGGGGTTAAGGCTGCGTCTGGAGCAGCTGGAGCTGCAGAGGGACAAGGAGAGGGTGGTACTGCAAGCTGCAGCCGAACAGGCCCAGGCCGAGCTGCGCAGGGTACAGCAGCATTCAGCAGAGCAGGTGTCCTCGCTCAGGGCTGACCATCAGAGGGAGCTGGAGAGCCTGCTTACCGGCCACGCCCTCGCCCACTCCTCCTCTAAAGTGGCCGAACTGACCAATCAGGTGACCGCGCAGGAGATCATGGTTCAGCATCTGCGTGACCAGGTGAAGGAACTGCAGGGGACCAAGGATGCTCTGGCTGTGTCCAAGCTGAGGGAGGACACCCTACAGAACCAGCTGACAAGGCTGTTGGAGGAGCTGAAGCAGGCCAAGGAGTGTCACAGCCCAGAGCTCCGACACTTCACTAGCCTGGAGAGAAAGATCCACAGCATGGAGCTACGACACActcagagggagaaagagctccagcagGTGATAGGTCAGACTCAGCTGGTGGTGGAGGCTGAACAGCAGTCTGAGGTGGAGCGTTGGAGGAGGCTGGCTCAGGGGAAGACCCGGGAGCTGGAGGTCTTCCGTCTGGAACTGGACTCTATCCTGGACGTCTTGAGAGAACTTCAGAGACAGGGAGTGGTCATCCCTGCTCCGGACCAGGCTTCTGCTGTACCCTTCAGCTGGAGGACCTGAAACATGGGACATAGGCTCTTTCTAATTACTTATAAATCTGTCCTCATCTTGTCTGATCTGAAAGAATTGACCAGGCGAAAgccagcttaatgatgagcttccACTATATAAGTATTTTTTTGTTTAGTGCAGATAAAGGGGATTTGTAAGCAATTGAGAGCCAACTCACACATCCTTTAGGAGAACCCATCATTGTGCTGAACAATCAGGTTATTTCTTTTTGTAGATTTGTATTTTTATACTTgatgattttaaatgtattaagTTATTCAATGTGTGTTACAAAATATGTTTATATTTTGTATAATTTCTTCCTGTGTGTTTTGAATTTGTAACAAGTAAAGCACAAAGATAAAACATCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262362 lncRNA downstream 3653 16800934 ~ 16801349 (-) True G229354
TU262310 lncRNA downstream 18795 16777240 ~ 16786207 (-) True G229304
TU262320 lncRNA downstream 80312 16723429 ~ 16724690 (-) True G229312
TU262270 lncRNA downstream 139317 16665191 ~ 16665685 (-) True G229274
TU262000 lncRNA downstream 619061 16185410 ~ 16185941 (-) True G229016
TU262392 lncRNA upstream 23580 16849688 ~ 16849899 (-) True G229379
TU262413 lncRNA upstream 46243 16872351 ~ 16872565 (-) True G229400
TU262428 lncRNA upstream 55714 16881822 ~ 16882595 (-) True G229415
TU262457 lncRNA upstream 71911 16898019 ~ 16898275 (-) True G229440
TU262459 lncRNA upstream 74108 16900216 ~ 16900574 (-) True G229442
XM_036970556.1 mRNA downstream 383025 16195901 ~ 16421977 (-) True LOC110512031
XM_036970551.1 mRNA downstream 383026 16187381 ~ 16421976 (-) False LOC110512031
XR_005041267.1 mRNA downstream 839557 15965041 ~ 15965445 (-) True LOC118946082
XR_005039833.1 mRNA downstream 869558 15932818 ~ 15935444 (-) False LOC118944492
XM_036970514.1 mRNA downstream 892273 15900898 ~ 15912729 (-) True LOC110503781
XM_036970571.1 mRNA upstream 249405 17075513 ~ 17188343 (-) False LOC110503762
XM_036970574.1 mRNA upstream 249405 17075513 ~ 17188344 (-) False LOC110503762
XM_036970573.1 mRNA upstream 249405 17075513 ~ 17188345 (-) False LOC110503762
XM_036970575.1 mRNA upstream 249405 17075513 ~ 17188345 (-) False LOC110503762
XM_036970568.1 mRNA upstream 249405 17075513 ~ 17188346 (-) False LOC110503762
TU261050 other downstream 1013837 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1096737 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 1203514 15601015 ~ 15601488 (-) True G228094
TU260846 other downstream 1266687 15536365 ~ 15538315 (-) True LOC110512327
TU259832 other downstream 2168292 14598789 ~ 14636710 (-) False LOC110503689
TU262386 other upstream 13281 16839389 ~ 16839839 (-) True G229373
TU262393 other upstream 23864 16849972 ~ 16850199 (-) True G229380
TU262748 other upstream 218917 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 1149137 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 1267648 18093756 ~ 18131054 (-) False LOC110503747

Expression Profile