LOC110512031 (grik2)


Basic Information

Item Value
gene id LOC110512031
gene name grik2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16187381 ~ 16421977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970551.1
GTTTTTTCGACCAACAGGAGGCGTGTCTTCCCCACGGCCGGAGCGGAGCGCAGCGAGACGCGAGTCTGAAGGAACCGATCTGGCTCGTCTCTCTATCGGAACAAATCAACTACTTTCTCAGCTCATTCTAATCGAAGACCGCCCGTGAATGGATTTCTCCCGGATTTGCCCAGACTATCATGGATGCCCCACCGTTAGCTGAGTGGGAAGGTTGTTTCTTGGCGCAGTGAGCTGGACACGCAGCGCTTGCTAATGGATCTGGGGAAACGAATGATACCTTCTCCCTGACTGACCATGCCGTGATCTTGCCGTGGGCCGTCACCCTGTTTAACGTCAAAAGAAACATTTCGGGGGAATCTACTGATCCAGGGAATAAATACTGTGGCATCACACAGACACCATGAAGATTACCTCCCCGCTCATAAGTAAAGCGAGATTCAGGTGCACCGTCAGGcttctactgctgctattactatgtGTGGGATATTCTCGCGGGATGCCACATGTTTTAAGATTTGGAGGAATATTTGAGTCCATTGAGTCGGGGCCGTCAGGTGCTGAGGAACTAGCCTTTAAATTTGCTTTAAATACAATCAACAGGAACAGAACCCTACTGCCAAACACAACGCTAACATACGACATCCAACGGATAAACATCTACGACAGCTTCGAAGCCTCCAGAAAAGcctgcGACCAACTATCTCTGGGGGTGGCGGCCATCTTCGGGCCCTCCCACAGCTCGTCGGCCAATGCGGTCCAGTCCATCTGTAACGCGCTTGGCGTGCCCCACATCCAGACCAAATGGAAGCACCAGGTGTCTGACAACAGGGACTCTTTCTACGTCAGCCTCTACCCAGACTTCTCCTCTCTCAGCCGAGCCATTCTGGACCTGGTTCACTTCTTCAAGTGGAAGACGGTCACCGTTGTCTATGATGACAGCACAGGTCTTATTCGGTTACAGGAGCTCATAAAGGCTCCATCTCGCTACAACATCCGCTTGAAGATCCGCCAGTTGCCAGCGGACACCAAGGACTCCAAGCCTCTCCTcaaggagatgaagagagggaaggagttcCACGTCATCTTCGACTGTGGACACGAAATGGCTGCCGGCATCCTAAAACAGgctctTGCTATGGGGATGATGACAGAGTACTATCACTACATCTTCACCACACTGGACCTGTTTGCGCTGGACGTGGAGGCCTACCGTTACAGTGGGGTGAACATGACTGGCTTTAGGATCCTGAATACGGAGAACAGccaagtggcctccatcatagAGAAGTGGTCCATGGAACGCCTGCAGGCCCCGCCCAAACCTGACTCTGGCCTACTGGACGGCTTCATGACGACGGACGCTGCGCTCATGTACGATGCCGTGCACGTGGTGGCCGTGGCCGTGCAGCAGTCTCAGCAGATCACTGTCAGCTCCCTACAGTGCAACAGACACAAACCCTGGCGCTTTGGGAACAGATTCATGGCCCTCATCAAAGAGgCCCACTGGGATGGCTTGACTGGGCGGATCACTTTCAACAGAACCAACGGCTTGAGGACAGACTTTGACCTGGATGTGATTAGTCTGAAGGAGGATGGACTGGAGAAGATTGGAACATGGGACCCTCCTAGTGGCTTGAACATGACAGACCACCAGAAGGGGAAGACATCCAACGTCACAGACTCCTTAGCCAACAGATCTCTAGTTGTCTCCACCATACTGGTGGAGCCCTATGTGATGTTCAAGAAGTCAGACAAGCCCCTTTACGGTAACGACCGCTTTGAAGGTTACTGCATCGACCTGCTGAGGGAGCTGGCTAGCATCCTGGGGTTCACCTACGAGTTGCGTCTGGTGGAGGACGGCCGCTACGGGGCCCAGGACGAGACCACGGGCCAGTGGAACGGCATGGTCAAGGAGCTGATCGACCACAAAGCTGATCTGGCAGTGGCTCCCCTGGCCATCACCTACGTGAGGGAGAAGGTCATCGACTTCTCCAAGCCCTTCATGACACTGGGGATAAGTATCCTCTACCGCAAGCCCAACGGAACCAACCCTGGGGTCTTCTCCTTTCTCAACCCCCTCTCACCCGATATCTGGATGTATATTCTGCTGGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTTTAGTCCCTACGAGTGGTATAACCCCCACCCCTGCAACCCCGACTCAGATGTAGTGGAAAACAATTTCACCCTGCTAAATAGTTTCTGGTTCGGAGTTGGAGCTCTCATGCAGCAAGGCTCTGAGTTAATGCCCAAAGCCCTGTCCACCAGGATCGTAGGAGGCATCTGGTGGTTCTTCACCCTGATAATCATCTCCTCCTACACTGCCAACCTGGCTGCCTTCCTCACTGTGGAGAGGATGGAGTCGCCCATCGACTCAGCTGACGACCTGGCCAAGCAGACCAGGATAGAGTATGGAGTGGTAGAGGAGGGATCCACCATGACCTTCTTCAAGAAAACCAAGATCTCCACGTACGACAAGATGTGGGAGTTTATGAGCAGTCGGAGGCACTCTGTGATGGTGAAAGATATTGACGAAGGGATCCATCGAGTTCTCACCTCGGACTACGCCTTCCTCATGGAGTCCACCACCATCGAGTTTGTCACCCAGCGCAACTGCAACCTTACCCAGATAGGGGGTCTCATCGACTCCAAAGCCTACGGCGTGGGAACCCCCATGGGTTCTCCATACAGGGACAAGATCACCATAGCGATCCTGCAGCTGCAGGAAGAAGGAAAGCTGCACATGATGAAGGAGAAGTGGTGGAGGGGGAACGGTTGTCCGGAGGATGAGAAGAATAAGGAGGCCAGCGCTCTGGGGGTCCAGAACATCGGGGGCATCTTTATCGTCCTGGCGGCTGGACTCGTCCTGTCGGTGTTCGTGGCAGTCGGAGAGTTCATCTATAAATCCAAACAAAACGCACAACTGGAAAAGaggtCCTTCTGCAGTGCCATGGTGGACGAGTTGCGGGTGTCCCTCAAGTGCCAGCGGCGCCTCAAACACAAGCCTCAGCCACCCGTCATGGTGAAGACAGAGGACGTCATCAACATGCACACCTTCAACGACCGCAGACTGCCAGGCAAAGAGACCATGGCCTAGAACaggactccctctctctctatccctctaactctttctatctctctctctctgctcacagGGAGGAGTGTAGGGTGAAGAGACactgggggagggaggaagggtgataGTTGATTTATGTGAGTGtatttggaggggggggggttaagagagattgggagaggagattgggagaggagatgagatgagaagaaaaggagaagagaagagaagagaagtggagaagagaggaactGAGCTGCTCTGATCACTGACTGGACTGACTGGTATCGTTGTTTTGAAACACTAAGCAAGAAATGAAAAGAGATTCAACAATGTTTCCTGTGGAAATAACTTGAACTAACCTGGGAGCAATTCAATGTGAGTTACCTCATTAATCTACCTGGCAATGCACCTGAGCAAGGAGTGACCAAGTGGTGCCATGATTTAgtataaaaaaagagagagataaaccCAGGAttcagaggaaaggagagagggcagGTTAAATTGAAAGTATAGAATATCATACATATGGTACATGTTTGGTTGTACGTTAAATATTGATTCAATTTGGACATGTGATCTCTATCTGCTAcccaaccactctctctctctctcactgagtaGACCACATGCAGAGAGCTTGGTTAGGTAGAATCAGGAGAGCGTACATCCCTCAGTCATAGTTATGGAgcaaacacatacacagacactaacagaagaaatggagagaaaatCAGTTGGCGAGTGTGTAAAGGACGCATCTTGTTTTTATTCAACCATAGAAGAAGAAGGAGACCAGATGGGCTAGAAACAGCCAGTTCCAAATGAAACCCAAAGCCCAAAACGCATTGGTGAGCAGGACAGGACTGCTCCCAACATGTACAGAGGCATCGTTTATTCATGTGATTCACTGTTGGAAagaatacagtacattatccATTAGGCAATAGGGGATTTCATTTACTTTATTTCAGAGTACTAACATTTTGTTAAATTATGGGGGATGGAAAACATTTTttgaatgaaaaaatatatacatatataaatacaAGAGAGACAGATTAGCGGGTGTGAGGCAGTGATGTAATAGAGGAATTAGGTGATAGGAACTGGAAGTGACATGGAGAGTTGCGGACATGATGAAAGTAGTAACCTTGGAAACCTTAGTAGTTTGAATTGAAGGAAAGCAGGACAGCAGGAGTGGATCTGAAACAACATTCACAACAATCACACAACATGAGGAATTTATTTATTCAAgtatttatttctttatttatatTTTCATGGACTGGATTTTCACAGCAGCTGCAAGGATACAGTACACACCTCATTTTCAGATTTGATGGGTACACATGTTTTGGTTTCCTTTTTTGTTCAATGTCAAGTCTCAAGTTTCTTTTTGTATTCTTGTGGCTTTTATTTTAGTAACAAAATCCTCACATTTACTTGTGCAAATGCAATTTCTATGAAAAAAGTGTTTTTGTACGAAGAAAATCAAAAATTTTGTAATAATTTTTATCAACACAAAATGCACCACGGATGTCACCACGGCAGACAGCgagcctctctctccactgtgggCCGTGTGGGCATCCCAAGGGATAGCAGCCCCATCTAGGATAGCCCCGTCAGGCCTAACACAATCCCCTCCAGGGGGTCACGAGAACAACCCCTCCATGGACCGGCCTCACACCGATGGGGTCTCCAGAGCATTCTGGTTGAGCTTCAGTGGCATAATACATGTTTTGGAAAAACTATTTTTATCATGTAAAGGAATCATATTTAAAAGAAAGATATTTTTACTTCAGGTGAAAGAAAAGTAATGATTAAACAATAATTAGAagaatacatatatatacacacaaagaaGCTGAAGTGAAGAGGACTGCCAATGATGCTTATCATTCTACACCCCTGAATTGCAATAGACTGCTAGTTTTCAGTGCTGAGAAATTGTGTGTAAATGGTTATAAAAACGGAAAAATATGTATTTAACAAAATAAAGAACACcgacagtggcaagaaaaagtatgtgaatcctttggaaatacctggatttctgcataaattgttcATACAATTTGATCTTATCTTCATTTAGGTCAGAACAATAGACAagcacagtctgcttaaactaataacacacaaacaattatacaaacaattatacattttcatgtctttattgaacacactgtgtaaacattcacagtgcagggttgaaaaagtatgtgaatccttg
>XM_036970556.1
AGTTTTTTCGACCAACAGGAGGCGTGTCTTCCCCACGGCCGGAGCGGAGCGCAGCGAGACGCGAGTCTGAAGGAACCGATCTGGCTCGTCTCTCTATCGGAACAAATCAACTACTTTCTCAGCTCATTCTAATCGAAGACCGCCCGTGAATGGATTTCTCCCGGATTTGCCCAGACTATCATGGATGCCCCACCGTTAGCTGAGTGGGAAGGTTGTTTCTTGGCGCAGTGAGCTGGACACGCAGCGCTTGCTAATGGATCTGGGGAAACGAATGATACCTTCTCCCTGACTGACCATGCCGTGATCTTGCCGTGGGCCGTCACCCTGTTTAACGTCAAAAGAAACATTTCGGGGGAATCTACTGATCCAGGGAATAAATACTGTGGCATCACACAGACACCATGAAGATTACCTCCCCGCTCATAAGTAAAGCGAGATTCAGGTGCACCGTCAGGcttctactgctgctattactatgtGTGGGATATTCTCGCGGGATGCCACATGTTTTAAGATTTGGAGGAATATTTGAGTCCATTGAGTCGGGGCCGTCAGGTGCTGAGGAACTAGCCTTTAAATTTGCTTTAAATACAATCAACAGGAACAGAACCCTACTGCCAAACACAACGCTAACATACGACATCCAACGGATAAACATCTACGACAGCTTCGAAGCCTCCAGAAAAGcctgcGACCAACTATCTCTGGGGGTGGCGGCCATCTTCGGGCCCTCCCACAGCTCGTCGGCCAATGCGGTCCAGTCCATCTGTAACGCGCTTGGCGTGCCCCACATCCAGACCAAATGGAAGCACCAGGTGTCTGACAACAGGGACTCTTTCTACGTCAGCCTCTACCCAGACTTCTCCTCTCTCAGCCGAGCCATTCTGGACCTGGTTCACTTCTTCAAGTGGAAGACGGTCACCGTTGTCTATGATGACAGCACAGGTCTTATTCGGTTACAGGAGCTCATAAAGGCTCCATCTCGCTACAACATCCGCTTGAAGATCCGCCAGTTGCCAGCGGACACCAAGGACTCCAAGCCTCTCCTcaaggagatgaagagagggaaggagttcCACGTCATCTTCGACTGTGGACACGAAATGGCTGCCGGCATCCTAAAACAGgctctTGCTATGGGGATGATGACAGAGTACTATCACTACATCTTCACCACACTGGACCTGTTTGCGCTGGACGTGGAGGCCTACCGTTACAGTGGGGTGAACATGACTGGCTTTAGGATCCTGAATACGGAGAACAGccaagtggcctccatcatagAGAAGTGGTCCATGGAACGCCTGCAGGCCCCGCCCAAACCTGACTCTGGCCTACTGGACGGCTTCATGACGACGGACGCTGCGCTCATGTACGATGCCGTGCACGTGGTGGCCGTGGCCGTGCAGCAGTCTCAGCAGATCACTGTCAGCTCCCTACAGTGCAACAGACACAAACCCTGGCGCTTTGGGAACAGATTCATGGCCCTCATCAAAGAGgCCCACTGGGATGGCTTGACTGGGCGGATCACTTTCAACAGAACCAACGGCTTGAGGACAGACTTTGACCTGGATGTGATTAGTCTGAAGGAGGATGGACTGGAGAAGATTGGAACATGGGACCCTCCTAGTGGCTTGAACATGACAGACCACCAGAAGGGGAAGACATCCAACGTCACAGACTCCTTAGCCAACAGATCTCTAGTTGTCTCCACCATACTGGTGGAGCCCTATGTGATGTTCAAGAAGTCAGACAAGCCCCTTTACGGTAACGACCGCTTTGAAGGTTACTGCATCGACCTGCTGAGGGAGCTGGCTAGCATCCTGGGGTTCACCTACGAGTTGCGTCTGGTGGAGGACGGCCGCTACGGGGCCCAGGACGAGACCACGGGCCAGTGGAACGGCATGGTCAAGGAGCTGATCGACCACAAAGCTGATCTGGCAGTGGCTCCCCTGGCCATCACCTACGTGAGGGAGAAGGTCATCGACTTCTCCAAGCCCTTCATGACACTGGGGATAAGTATCCTCTACCGCAAGCCCAACGGAACCAACCCTGGGGTCTTCTCCTTTCTCAACCCCCTCTCACCCGATATCTGGATGTATATTCTGCTGGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTTTAGTCCCTACGAGTGGTATAACCCCCACCCCTGCAACCCCGACTCAGATGTAGTGGAAAACAATTTCACCCTGCTAAATAGTTTCTGGTTCGGAGTTGGAGCTCTCATGCAGCAAGGCTCTGAGTTAATGCCCAAAGCCCTGTCCACCAGGATCGTAGGAGGCATCTGGTGGTTCTTCACCCTGATAATCATCTCCTCCTACACTGCCAACCTGGCTGCCTTCCTCACTGTGGAGAGGATGGAGTCGCCCATCGACTCAGCTGACGACCTGGCCAAGCAGACCAGGATAGAGTATGGAGTGGTAGAGGAGGGATCCACCATGACCTTCTTCAAGAAAACCAAGATCTCCACGTACGACAAGATGTGGGAGTTTATGAGCAGTCGGAGGCACTCTGTGATGGTGAAAGATATTGACGAAGGGATCCATCGAGTTCTCACCTCGGACTACGCCTTCCTCATGGAGTCCACCACCATCGAGTTTGTCACCCAGCGCAACTGCAACCTTACCCAGATAGGGGGTCTCATCGACTCCAAAGCCTACGGCGTGGGAACCCCCATGGGTTCTCCATACAGGGACAAGATCACCATAGCGATCCTGCAGCTGCAGGAAGAAGGAAAGCTGCACATGATGAAGGAGAAGTGGTGGAGGGGGAACGGTTGTCCGGAGGATGAGAAGAATAAGGAGGCCAGCGCTCTGGGGGTCCAGAACATCGGGGGCATCTTTATCGTCCTGGCGGCTGGACTCGTCCTGTCGGTGTTCGTGGCAGTCGGAGAGTTCATCTATAAATCCAAACAAAACGCACAACTGGAAAAGCCCCAACGGCACCAAGGTGATAGGAAGCGTGAGGAGTTCTGCTGTCACCACGGACCCTCCAAGCAGCTACCTGTAGACTTTAACCACCAGCTCAAATGACCTCCAGAaagactccagagactccagtcaTCTACAATTACCTTAAAATgcacaaattgtatttttttaacttCAGATAGTTCCCGATTGGGAAGTTTCCTGTCGGAAGAACTGGCAGCGATGTTATGGTCACAACGTTTCAATGAAAGGTTGCCATTGGTGCATGGTTAAGTGTATGTGTTCGAAAGGTGTCCCTAAAACTATTGGTGCACAGTTTCACACGATGGGATTGGAAGGTTGGCCCAAATGCATGATCCATAATGTTCATGTAAATGTCACCAGTCATACGCCTTGCCACTCTCGTCTTCATGTCACCCTCAACACACAGCCACAGCAATCCTCTCCCCcaaaatatatcattattatcagATACAAACTTTTGGACAGACAAGCCAAACTGAATCAAGCTATAATTGCAAACTCTATGAAGGCTTGGTTTTGTAAGCTTGCAGCTATTATAACATACTAAGTACTATACTGAATAATCTCATATTGAAAGTGTAATGCTACAACAACACATCACTCATCATCAACAGCATGTAAAACTTTTGATGTTCCCCTTAAACCCATGTCCTTCCTGGGATTCCTGTCCTGTCCTTCCTGGCCTGCTCTGTCCTTCctgtcctgtccctgtcctgCCTGTCCTTCCTGTCCTGTCCTTGTCCTGTCCTTCCTGGGATTCCTGTCCTGTCCTTGCTGGGATTCCTCTCTTGATtttcctgccctgccctgtccttcctgccctgctctgtccttcctttcctgtcctgtccttcctgccctgctctgtccttcctgctctgtcctgtcctgccctgtcctgctctgtccttcctgct

Function

symbol description
grik2 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 2 isoform X2

GO: NA

KEGG:

id description
K05202 GRIK2; glutamate receptor, ionotropic kainate 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970551.1 False 5360 mRNA 0.48 17 16187381 16421976
XM_036970556.1 True 3907 mRNA 0.52 17 16195901 16421977

Neighbor

gene id symbol gene type direction distance location
LOC118946082 NA coding downstream 221936 15965041 ~ 15965445 (-)
LOC118944492 NA coding downstream 251937 15932818 ~ 15935521 (-)
LOC110503781 LOC106605653 coding downstream 274652 15900898 ~ 15912729 (-)
LOC110512120 LOC106605647 coding downstream 325812 15853231 ~ 15861569 (-)
LOC110503786 telt coding downstream 357355 15824078 ~ 15830026 (-)
cep162 cep162 coding upstream 383025 16805002 ~ 16826110 (-)
LOC110503762 LOC106605503 coding upstream 653536 17075513 ~ 17188347 (-)
LOC118946294 NA coding upstream 680488 17102465 ~ 17105382 (-)
LOC110511923 LOC106579390 coding upstream 1518541 17940518 ~ 17947436 (-)
LOC110511898 LOC106579390 coding upstream 1535271 17957248 ~ 17964878 (-)
G229016 NA non-coding downstream 1440 16185410 ~ 16185941 (-)
G229009 NA non-coding downstream 9955 16177170 ~ 16177426 (-)
G229007 NA non-coding downstream 11493 16175221 ~ 16175888 (-)
G229005 NA non-coding downstream 19162 16168002 ~ 16168219 (-)
G228994 NA non-coding downstream 35044 16151776 ~ 16152337 (-)
G229274 NA non-coding upstream 243214 16665191 ~ 16665685 (-)
G229312 NA non-coding upstream 301452 16723429 ~ 16724690 (-)
G229304 NA non-coding upstream 355263 16777240 ~ 16786207 (-)
G229354 NA non-coding upstream 378957 16800934 ~ 16801349 (-)
G229379 NA non-coding upstream 427711 16849688 ~ 16849899 (-)
G228191 LOC106578455 other downstream 396216 15762029 ~ 15791401 (-)
G228098 fbrl other downstream 479116 15706234 ~ 15708265 (-)
G228094 NA other downstream 585893 15601015 ~ 15601488 (-)
LOC110512327 LOC106578554 other downstream 649066 15536363 ~ 15539677 (-)
LOC110503689 tm149 other downstream 1550671 14598789 ~ 14638314 (-)
G229373 LOC100194703 other upstream 417412 16839389 ~ 16839839 (-)
G229380 LOC106605502 other upstream 427995 16849972 ~ 16850199 (-)
G229707 NA other upstream 623048 17043792 ~ 17048344 (-)
LOC110505118 LOC106579600 other upstream 1553268 17975160 ~ 17985544 (-)
LOC110503747 lars2 other upstream 1671779 18093704 ~ 18154474 (-)

Expression


Co-expression Network