RNA id: TU262428


Basic Information

Item Value
RNA id TU262428
length 774
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G229415
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16881822 ~ 16882595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAATGTAATATTTTGTCTCGTTGTCTTGTGTGCCATGATGTTATCATGACAACTCTGGGGGTATACTGGTGTAAACATATAGGGGACTGTTCATAAATGTATATCTAAGGAGTATTGTATCAAGACTTGTCTGTGAGACACGTCATCTCAAGTTCCCCACAGAAAGATACGGCCTCAGTAGGACCAATGCACATCTGTTGTCTAAGTGTTGCTTGACTGTTGTTATCCTGTGCATTTATTGGTTTCCCCGATGCGGTCTATCTTCAGACATGTTCTACAGCGACCTAGACCAGGGATAAGCTACTGACAcccagttcactggtcacgatggcaacacccacccgtagcacgcgctccagcaggtgtatctcactgatcatccctaaagccaacacctcatttggttgcctttccttccagttctctgctgcctgtgactggaacgaattgcaaaaatcgctgaagttggagacctttatctccctcaccaactttaaacatctgctatctgagcagctaaccgatcgctgcagctgtacatagtccatcggtaaatagcccacccaatttacctacctcatccccatactgtttttatttatttacttttctgctcttttgcacaccagtatctctacctgcacatgaccatctgataatttatcactccagtgttaatctgctaaattgtaattatttgcctacctcctcatgccttttgcacacaatgtatatagactcttttttttatttttttatactgtgttattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262413 lncRNA downstream 9257 16872351 ~ 16872565 (-) True G229400
TU262392 lncRNA downstream 31923 16849688 ~ 16849899 (-) True G229379
TU262362 lncRNA downstream 80473 16800934 ~ 16801349 (-) True G229354
TU262310 lncRNA downstream 95615 16777240 ~ 16786207 (-) True G229304
TU262320 lncRNA downstream 157132 16723429 ~ 16724690 (-) True G229312
TU262457 lncRNA upstream 15424 16898019 ~ 16898275 (-) True G229440
TU262459 lncRNA upstream 17621 16900216 ~ 16900574 (-) True G229442
TU262491 lncRNA upstream 44988 16927583 ~ 16927973 (-) True G229474
TU262515 lncRNA upstream 66957 16949552 ~ 16949832 (-) True G229498
TU262519 lncRNA upstream 69818 16952413 ~ 16952648 (-) True G229502
XM_036970564.1 mRNA downstream 55712 16805002 ~ 16826110 (-) False cep162
XM_036970565.1 mRNA downstream 55712 16805002 ~ 16826110 (-) False cep162
XM_036970566.1 mRNA downstream 55712 16805002 ~ 16826110 (-) True cep162
XM_036970567.1 mRNA downstream 55714 16805002 ~ 16826108 (-) False cep162
XM_036970556.1 mRNA downstream 459845 16195901 ~ 16421977 (-) True LOC110512031
XM_036970571.1 mRNA upstream 192918 17075513 ~ 17188343 (-) False LOC110503762
XM_036970574.1 mRNA upstream 192918 17075513 ~ 17188344 (-) False LOC110503762
XM_036970573.1 mRNA upstream 192918 17075513 ~ 17188345 (-) False LOC110503762
XM_036970575.1 mRNA upstream 192918 17075513 ~ 17188345 (-) False LOC110503762
XM_036970568.1 mRNA upstream 192918 17075513 ~ 17188346 (-) False LOC110503762
TU262393 other downstream 31623 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 41983 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1090657 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1173557 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 1280334 15601015 ~ 15601488 (-) True G228094
TU262748 other upstream 162430 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 1092650 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 1211161 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 1211161 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 1717135 18599730 ~ 18601875 (-) True G231652

Expression Profile