RNA id: TU262491


Basic Information

Item Value
RNA id TU262491
length 391
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G229474
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16927583 ~ 16927973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagcctcaaggacgtttttaaaacgccttattgtaacaaatgaactgtgtgatatttggcggagtcaacatggaggaacaaggcagtacacctgggcgcatgtgagagagaacatcatctctatggccaggttagataggttttatgtttttgagcatcaatctcaggtctgtaaatcaagtgtgataactccagtaggattttctgatcattgtttaataacagaggtggtattcattaacgatgtaaaacctaaaagctcatactggcattttaatataactttattgagtgatgctcacttcaggaaatgtttcagttttttttgggagaggtggaggtctcaaaaggccagttttgtatcccttcaacaatggtgggatatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262459 lncRNA downstream 27009 16900216 ~ 16900574 (-) True G229442
TU262457 lncRNA downstream 29308 16898019 ~ 16898275 (-) True G229440
TU262428 lncRNA downstream 44988 16881822 ~ 16882595 (-) True G229415
TU262413 lncRNA downstream 55018 16872351 ~ 16872565 (-) True G229400
TU262392 lncRNA downstream 77684 16849688 ~ 16849899 (-) True G229379
TU262515 lncRNA upstream 21579 16949552 ~ 16949832 (-) True G229498
TU262519 lncRNA upstream 24440 16952413 ~ 16952648 (-) True G229502
TU262525 lncRNA upstream 33370 16961343 ~ 16961562 (-) True G229508
TU262720 lncRNA upstream 88332 17016305 ~ 17016521 (-) True G229682
TU262723 lncRNA upstream 92023 17019996 ~ 17020385 (-) True G229685
XM_036970564.1 mRNA downstream 101473 16805002 ~ 16826110 (-) False cep162
XM_036970565.1 mRNA downstream 101473 16805002 ~ 16826110 (-) False cep162
XM_036970566.1 mRNA downstream 101473 16805002 ~ 16826110 (-) True cep162
XM_036970567.1 mRNA downstream 101475 16805002 ~ 16826108 (-) False cep162
XM_036970556.1 mRNA downstream 505606 16195901 ~ 16421977 (-) True LOC110512031
XM_036970571.1 mRNA upstream 147540 17075513 ~ 17188343 (-) False LOC110503762
XM_036970574.1 mRNA upstream 147540 17075513 ~ 17188344 (-) False LOC110503762
XM_036970573.1 mRNA upstream 147540 17075513 ~ 17188345 (-) False LOC110503762
XM_036970575.1 mRNA upstream 147540 17075513 ~ 17188345 (-) False LOC110503762
XM_036970568.1 mRNA upstream 147540 17075513 ~ 17188346 (-) False LOC110503762
TU262393 other downstream 77384 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 87744 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1136418 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1219318 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 1326095 15601015 ~ 15601488 (-) True G228094
TU262748 other upstream 117052 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 1047272 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 1165783 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 1165783 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 1671757 18599730 ~ 18601875 (-) True G231652

Expression Profile