RNA id: TU262519


Basic Information

Item Value
RNA id TU262519
length 236
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G229502
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16952413 ~ 16952648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATAACTGCATTTGTCTGCCATTTACTCCACTTATCAGTgcttcttcccttcctccctgttTTCCATAATAACCCCAAATCTAGATGACAAATGATTTGTGAAAGACGAGTGGGGTTTAAGTAGTTTTTCTTCCAATTCACATTCAGACTgttagatggatggatgggctaGATTACCCACTAAATAAAGTGTCTCATATTTCCGACCTCTAAATGCATTGCTTCAATAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262515 lncRNA downstream 2581 16949552 ~ 16949832 (-) True G229498
TU262491 lncRNA downstream 24440 16927583 ~ 16927973 (-) True G229474
TU262459 lncRNA downstream 51839 16900216 ~ 16900574 (-) True G229442
TU262457 lncRNA downstream 54138 16898019 ~ 16898275 (-) True G229440
TU262428 lncRNA downstream 69818 16881822 ~ 16882595 (-) True G229415
TU262525 lncRNA upstream 8695 16961343 ~ 16961562 (-) True G229508
TU262720 lncRNA upstream 63657 17016305 ~ 17016521 (-) True G229682
TU262723 lncRNA upstream 67348 17019996 ~ 17020385 (-) True G229685
TU262724 lncRNA upstream 67924 17020572 ~ 17020802 (-) True G229686
TU262725 lncRNA upstream 68637 17021285 ~ 17021693 (-) True G229687
XM_036970564.1 mRNA downstream 126303 16805002 ~ 16826110 (-) False cep162
XM_036970565.1 mRNA downstream 126303 16805002 ~ 16826110 (-) False cep162
XM_036970566.1 mRNA downstream 126303 16805002 ~ 16826110 (-) True cep162
XM_036970567.1 mRNA downstream 126305 16805002 ~ 16826108 (-) False cep162
XM_036970556.1 mRNA downstream 530436 16195901 ~ 16421977 (-) True LOC110512031
XM_036970571.1 mRNA upstream 122865 17075513 ~ 17188343 (-) False LOC110503762
XM_036970574.1 mRNA upstream 122865 17075513 ~ 17188344 (-) False LOC110503762
XM_036970573.1 mRNA upstream 122865 17075513 ~ 17188345 (-) False LOC110503762
XM_036970575.1 mRNA upstream 122865 17075513 ~ 17188345 (-) False LOC110503762
XM_036970568.1 mRNA upstream 122865 17075513 ~ 17188346 (-) False LOC110503762
TU262393 other downstream 102214 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 112574 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1161248 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1244148 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 1350925 15601015 ~ 15601488 (-) True G228094
TU262748 other upstream 92377 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 1022597 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 1141108 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 1141108 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 1647082 18599730 ~ 18601875 (-) True G231652

Expression Profile