RNA id: TU262724


Basic Information

Item Value
RNA id TU262724
length 231
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G229686
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17020572 ~ 17020802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaacgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacgaatgagtggcttcgtaagaagcatttcaagatcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagtaacagccccaaaacatcactactctataggagatctgcatggaggattgggccaaaatac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262723 lncRNA downstream 187 17019996 ~ 17020385 (-) True G229685
TU262720 lncRNA downstream 4051 17016305 ~ 17016521 (-) True G229682
TU262525 lncRNA downstream 59010 16961343 ~ 16961562 (-) True G229508
TU262519 lncRNA downstream 67924 16952413 ~ 16952648 (-) True G229502
TU262515 lncRNA downstream 70740 16949552 ~ 16949832 (-) True G229498
TU262725 lncRNA upstream 483 17021285 ~ 17021693 (-) True G229687
TU262742 lncRNA upstream 19289 17040091 ~ 17040835 (-) True G229704
TU262743 lncRNA upstream 20292 17041094 ~ 17042920 (-) True G229705
TU262745 lncRNA upstream 22990 17043792 ~ 17045411 (-) False G229707
TU262746 lncRNA upstream 23893 17044695 ~ 17045411 (-) False G229707
XM_036970564.1 mRNA downstream 194462 16805002 ~ 16826110 (-) False cep162
XM_036970565.1 mRNA downstream 194462 16805002 ~ 16826110 (-) False cep162
XM_036970566.1 mRNA downstream 194462 16805002 ~ 16826110 (-) True cep162
XM_036970567.1 mRNA downstream 194464 16805002 ~ 16826108 (-) False cep162
XM_036970556.1 mRNA downstream 598595 16195901 ~ 16421977 (-) True LOC110512031
XM_036970571.1 mRNA upstream 54711 17075513 ~ 17188343 (-) False LOC110503762
XM_036970574.1 mRNA upstream 54711 17075513 ~ 17188344 (-) False LOC110503762
XM_036970573.1 mRNA upstream 54711 17075513 ~ 17188345 (-) False LOC110503762
XM_036970575.1 mRNA upstream 54711 17075513 ~ 17188345 (-) False LOC110503762
XM_036970568.1 mRNA upstream 54711 17075513 ~ 17188346 (-) False LOC110503762
TU262393 other downstream 170373 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 180733 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 1229407 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 1312307 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 1419084 15601015 ~ 15601488 (-) True G228094
TU262748 other upstream 24223 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 954443 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 1072954 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 1072954 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 1578928 18599730 ~ 18601875 (-) True G231652

Expression Profile