RNA id: TU266156


Basic Information

Item Value
RNA id TU266156
length 3513
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G232802
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19404919 ~ 19408499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGTTTCAGTTGTTTAATGTCGATCAAAAACGACAGGGACAGTTTTGCTGACATCATCACGCAAACCAGACCTTCCCTAAATGTGCACGCCACTATTCAGTTCCCATCATGCACTTGGTGTTTAGTCACACCCCATTAGCATTATATCCAGACGCCACAATGCGCATCTACCACGGTGATTGTAGTGGGTCCTGACAGTGACACATCCCCCTTCACAGAATGCTGACAGTCAGTCAGGAGACGTACCCCTCTAAGCTTCCGTAACgttgaaatatgacatttaccaGATTATTTTGTCTCAAGGTATTTACAGTGGGGTTCAAAATTATGACtgcataaaataaataattaaaatactgaGCTACATTCTATACTCCAAaaaattgggaaattatattatttatactaatacaattgctgaGAGAACAATtgtgtttaacaagtaatataatTTTTTTCTCAAAGAGTTAGGGGTAAAAAATATTGACACCCCTGTTAACAATACCTTTCAATATCTCACCTTGCAagaattgtcacgccctgaccttagagagcctttttatgtctctatttggtttggtcagggtgtgatttgggtgggcattctatgttccttatTTCTCgtttttgtgtttctatgttttggccgggtatggttatcaatcagggacagctgtctatcgttgtctctgattgggaatcatacttaggcagcctgttttgccaccttaggttGTGTGATGTTGGTTTTTGTTAGCTCTGTGTAGCCTTCAGAACGTGACGgtcgttgttgtttttgttggtgTTCGGATGAATTaaagaatcatgaacacgtaccacgctgcaccttggtccacttcttccgaCGAGCGTTACAATAAtaatggcactgagcctttttccaaattgttttatgagttggagaacacatcgAGAGGGATCTTAAACCATTTCTCAATACAGAATACTTCCAGATACTTGATATCCTAAGTCTGCTCCTATGGACTGCACTAATAATTTCAAACCACatgttttcaatgggtttcaagtccGGAAACTGAGTTGgcaattgcaaaatgttgatttttgtgGCAAATTCTTCTTTCGACGCGAAACCCACAACTGGCGTGCccggccaaagagctctattttttttgtcatctgaccaaagcactgGTTCCAATCCAATTGCCAATGCcattttagcaaactccaggcatttacatttgttggatgacatgaaaatagagctaaTAAATGAGAATGCATAAGCAGAAAAGCACCCCATACccactgtaaaatatggtgatagatctttgatgttatggggctattttgcctCAACTGGTCcaggggcccttgttaaggtcaatgcCATCATGATCCTTACCCAGTACAAGGACATTTTAGCCTAAAACCTTGTTGCCTCTgacaggaggctgaaacttgacCTCAAGTGGATCGtttagcaagacaataacccaaaGCActcatcaaaatccacaaagaaatagtTAATTGTCTACAAAAATCGACATTTTGCAATGGCAATCTCAGACATGAACCCCATCTGAAAacgtggtttgaattgaagagggcagttcaTAAGCGCAGTGTAACGgtcgtcgtcggtggaagaaggtgaggaccaaagcgcagcgtggtaagtgttcatgttttttaataaagtaacgaacactgaacaaaacaataaacgtgaagttatcaaaccgaaacagtcccgtgtggcaccaACACTAACACGGAAAAAGTGTAACCAAGCTCCCTAAGTATGACTCTCAATCtgggacaatgattgacagctgcctctgattgagaaccataccaggccgaacacagCAATCCTAAAtcaatagaaaaaagaacatagacaacccacccaactcacgccctgaccattctaaaacaaagacataatataagaactaaggtcagaacgtgacacgcagactaaggatatcaaggatctgaaaGGATTCTGTATGCAGGAAGTGTCTAAGATcgctcccaatgtgttctccaactcattaAATATTTTAGAAAAAAGCTCAGTGCCGTTATCCTGGCAAGGTGAgatattgaaaggtattgaaaaccggggtgtcaatcatttttacCCTTACCTTTTCTCTTCAGCAagtgtattagtataaaataatagaatttttttttaaattggggaGCACAGTATATGAATGATTTAAttatttttgctcatctttatcaagggctTCAATAATgtcagaccccactgtatatgaagATAAAGGATCATGTGAAAAATGTTGCCTAATAGCACAATTGTACATGTCATTGCTCAATTGTGCCAGGCAGGTCAACTCAGTAAAGTGCAGTGTAAGTGTTTGAAAGAAAATGTATACTATTTTAACCCAGGTCTGTTACTGAGAGAAGGCACAGTGAAAGAAAAGGCAGAGTGAAGGAGAAggcagagtgaaggaggagaaggCAGAGTGAAGGGGAAGGCACAGTGAAAGAGAAGGCAGAGTGAAGGAGAAGGCAGAGTGAAGGAGAAGGCACAGTGAAAGAGAAGGCAGAGTGAAGGAGAAGGCAGAGTGAAGGAGAAGGCACAGTGAAAGAGAAGGCAGAGTGAAGGAGAAGGCACAGTGAAAGAGAAGGCAGAGTGAAGGAGAAGGCACAGTGAAAGAGAAGGCAGAGTGAAGGAGAAGGCAGAGTGACAGAGAAGGCAGAGTGACAGAGAAGGCACAGTGAAAGAGAAGGCAGAGTGAAGGAGAAGGCACAGTGAAAGAGAAGGCAGAGTGAAGGAGAAGGCAGAGTGAAGGAGAAGGCACAGTGAAAgagaaggcagagggaaggagaaggcacagtgaaagagaaggcacagtgaaggagaaggcacagtgaaagaggagacagagtgaAGGAGAAGGCACAGAGATGAGTGGGCCGACTGTGACTCACACACTGCTGCCACTGACCCCTAGCGTTCCCTCTGATAAACTCACATTATGTCTGCAGAGCCCCAGTGGCTCAGTACCACGCCAGCATGCCAGAATGCCCAGTAGGAGACAATCCCAATGTGTAATGTGATGCTGTGTGACAACAGCACTGGGCCTTTTTTACAAAGGCCAAGCACATTGCAGCACTGCGCGCTGAACTACACACAATTTTCCCCAGAGTTTGTGAAGCTCATGTTCATGGTAAACGCTGTGGATGTCAGCTCAAGTGGATATGAGCTTTCAATGTGAAACACTGTGCGCTTCATACTTTAACACGGAAGTAAGGGTAGACAAAATAGTTTGGCAACATAATATCATCAGCATCAAAACATTGACTGGCATCTGCATTCAAACAAACATGCATTTTATCATGGTCCAGCATAACACAATTCACCGAACGTTTTGCATGTAGATCCTGAGCTAAACAGTCTCTTGCATGATGAGATCCATTCCTTTATATGGCGATGATTTCACCATCATAGGGCTTCCTGATTACAGGACTAGGCTGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266200 lncRNA downstream 15933 19388032 ~ 19388986 (-) True G232835
TU265383 lncRNA downstream 171402 19225570 ~ 19233517 (-) True G232105
TU265337 lncRNA downstream 273936 19130646 ~ 19130983 (-) True G232065
TU265336 lncRNA downstream 275163 19129473 ~ 19129756 (-) True G232064
TU265335 lncRNA downstream 277888 19126692 ~ 19127031 (-) True G232063
TU266238 lncRNA upstream 62707 19471206 ~ 19471551 (-) True G232873
TU266249 lncRNA upstream 77313 19485812 ~ 19486777 (-) True G232883
TU266265 lncRNA upstream 100680 19509179 ~ 19510193 (-) True G232898
TU266289 lncRNA upstream 144636 19553135 ~ 19554542 (-) True G232921
TU266340 lncRNA upstream 225465 19633964 ~ 19634713 (-) True G232971
XM_036971043.1 mRNA downstream 122551 19065512 ~ 19282368 (-) False LOC110511176
XM_021592216.2 mRNA downstream 380767 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA downstream 380767 18826879 ~ 19024152 (-) True LOC110511207
XM_021592221.2 mRNA downstream 502446 18826879 ~ 18902473 (-) False LOC110511207
XM_021592238.2 mRNA downstream 569589 18826879 ~ 18835330 (-) False LOC110511207
XM_036971122.1 mRNA upstream 7555 19416054 ~ 19424630 (-) False rims2a
XM_036971115.1 mRNA upstream 7555 19416054 ~ 19424631 (-) False rims2a
XM_036971108.1 mRNA upstream 7555 19416054 ~ 19582363 (-) False rims2a
XM_036971097.1 mRNA upstream 7555 19416054 ~ 19582365 (-) False rims2a
XM_036971132.1 mRNA upstream 7555 19416054 ~ 19582365 (-) False rims2a
TU265301 other downstream 122781 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 803044 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 1273865 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 1274833 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 1427010 17975245 ~ 17977909 (-) False LOC110505118
TU266171 other upstream 133603 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 239587 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 347705 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1143284 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 1240272 20648771 ~ 20651696 (-) True glipr2l

Expression Profile