RNA id: XM_036974130.1


Basic Information

Item Value
RNA id XM_036974130.1
length 2961
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110519987
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42946744 ~ 43004057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACAGAACAGGgccgtgctctctctctcccttgctctgaAGTTTAATTTTTAACTcgtaggagagaggagataggagaaaATCAGTGCCTGCTGTCAGGGTGCAGCTTGAAGCATGGCACAAGCAAAGGAGTAAATCCAATACTTTCTGGATGAAGAACTGTACGGACGGTCGATGGTACAAAACTCAGACTTCAGGCCAGTAATGGATAGTCTTGCCACGCTGAGCCGTGTGTTTCAAAGAAGCTAAAACGAGGAAGAAAGTTTCTGGTATGTCTAATAGGATCCTAATATTCTTCTGTGATATGGCTTATCTGGGCAACAAAGAGGTCAAACAAAGAGGTGTTAAGTTAATCTACTTTTAGAGTTAACCACGGTTTTGGACGAGGGTGTCAGAAATATATTATTTTATCTCTGAAAAATATATCTCTCCCTGGCTGTTTGGATTTCCTCTGGGCTCTATTACAGACTCTGCCCTGCTGAACTGATACGCTAGGAAAAAATCTATATCTGGAAATCGAAACTCAGTAACCATGAATGAGGGGGAGGCCGAGATAGCCGAGGAGAAAGACTGGAAGGAGCTGGAGCCCAACTATGCCATCAAAGTCTTCCTCACTGTCCTGTACAGCCTCATCCTGCTCACAGGCATCGTGGGTAATGGAATCACCATTCGGGTGACACAGGTGCTGCGGCAGAATGGCTACCTGCAAAAGTATGTGACGGACCACATGGTGAGCCTGGCATGTTCCGACCTTTTGGTCCTCCTCATAGGAATGCCCGTAGAGCTCTACAGTGCCACGTggttcccctttacctcagcctcgGGTGACGCTTCCTGCAAGATCTACAACTTCCTGTTCGAGGCCTGCAGTTACGCCACCATCTTGAATGTGGCGACGCTCAGCTTTGAACGCTACATTGCCATTTGCCACCCGTTCCGCTTCAAGGCCCTGGGCAGAGAGCGAACAACGGGAAGTCTCATCGCTCTCGCCTGGGTCACGTCCGTGTTCGTAGCCCTCCCGCTGCTGTTCGTCACAGGAATGGAGGGCTATGTCCCAGAGCGAGCCATCATGCCCGTCCAGAACCTGACGTTCTGCACCAACCTGAGAAACCAGTGGGGAATGTACAGGGCCAGTATCTTTGTGGCGTTCATTGTGTACATGGTGGTGCTGGTCAGCGTGGGGGTCATGTGTCGGGCCATGATCCTGGTCCTTCAGAAAACCATGGGGCCCATAGGAAGAGGGGTCAACGGAGTTGAGGACAAGTCAAAACACGAGAGTGCCAGGGTCAAAGCCGCCAAGAAGCAAACCATCCTTTTTCTAGgtTTAATCGTGGGCTCACTTACCGTGTGCTGGCTGCCCAACCAGGTGCGTCGCCTGATGACTGCCGCCGTGCCCAAGTCCAGCTGGACCATGTCCTACTTCCGCAACTATGTGGTGCTGCACCCTGTGGCCGACACCTTCTTCTACCTTAGTTCCGTGCTCAACCCCTTCCTGTACAACCTCTCTTCCCGCCAGTTCCGACAGGTCTTCGTCCAGGTGCTACGCTGCCGCCTCACCATCGAGCACGTAAACAAACGGACTCTGAGGAGCTTCGAGGCCAACTCGGCCCGCTCACTGCGGCCCCTGCTAAAGTCACTGCGTCGTGGTGGTGGCAACAGGTCTACTCAGACTCAGAGCAAGGAGTTCAAGATGCCTACATTCACTACCTTCCATAGTCCTAAGGACACTCCCCCTCGCAGCCCTGAGGAGGCCCTCCCCACAACCGATGAATCACTTTCAAATTCAGTCGGAAAGGGAAACATCCCCGAAGAGACTGAAATATAAGTTTATTAAAATACACGTATGACAGTTGTTTTGACTTGTGCTCTAACATGCTTCTTGGCTGAGGTTATGAAGTAGAATTGACGTTGTGAGTCAATACAGTCCAGAAAGACTTCTAGGTGACTTTGAAAGATGAACCAAAAGAGAGACACTTAGCTGTGTTCAGTATTACAGTATTCAATTCATCGGAGAGGGATACAGGGTGTCATCCAACTCAGATTTCAACAATCTGCCACAAGCTGATTTGTCAGAGTCTAAAATACAGTAATACATCCAGTCAAAGAACAGTCAGGACATTTTTACCAATTTCATCTCATACTGTACATTGTAATACCTGGAACACTGGAAAAGCTTGGTATTTGAACAGTGTTAATTACAGTGATTTGTTTCCATTACATGAGATGACACTTCTCTTGGCCCTACTGTAACTCATATTTTCACAGTCACTTAAGATGCGACTGAAAACTAAGCTCAACATTATTCATCATGACATGGTGTCTGCATTGTACATTGTGTCCAAAGTCTACTTTTCTATTCATTTGTGTGGCATCCACTGACAGAGTTGACCACTTCCTAAATTGGACCCAGTGCATATGATTTGATCTCAAGACAAATgtaatttttgtttcatcactacagtatcagcATCATTATTTTAACATTAAAAATGGTCACTTCCTCTGTTGTGTTATTTGTGGGTTTTTTTCATcttttgtctctgtactccaTTTTATCTACTGTACAAATATACCTCATCCAGTTCATCTataaatgtacatattaccttctAGTGCCCTCAGTTGGCCAGTCAACAGCTATGTTTCGCTTAACTTGTCCAGTGACTTTTTTGTTGACATTTAGAAAGTTTGCATAGAAAATACATGTGACAATTGCCTGTTACGGTGCGTTTCCAATTAACTATCTTGTGTCAATAAAAACAGCTGTACATAGTGATGTCACAcctaaaaaactttttttttagcAAAAACCTACAGTGTCGAATAAAATGTGGTTTATGTGATTCTATTACACATTTAGGCAAATAGCGCATTAATAATTTGGCGACAGCCAGtatgccctcccacctatctgtttaaTTTCTCAGGTAGGCTTGCAAAAGCCAGCAACATTGATCAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08412 GPR39; G protein-coupled receptor 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295855 lncRNA downstream 51752 42830496 ~ 42894992 (-) True G259941
TU295875 lncRNA downstream 73575 42867849 ~ 42873169 (-) True G259959
TU295876 lncRNA downstream 77137 42868561 ~ 42869607 (-) True G259960
TU295870 lncRNA downstream 83627 42856319 ~ 42863117 (-) True G259954
TU295738 lncRNA downstream 205173 42666995 ~ 42741571 (-) False G259830
TU296716 lncRNA upstream 212884 43216941 ~ 43217190 (-) True G260762
TU296725 lncRNA upstream 222231 43226288 ~ 43226682 (-) True G260771
TU296730 lncRNA upstream 227976 43232033 ~ 43232277 (-) True G260776
TU296746 lncRNA upstream 246285 43250342 ~ 43250568 (-) True G260792
TU296871 lncRNA upstream 420297 43424354 ~ 43510022 (-) True G260914
XR_005045624.1 mRNA downstream 329568 42592366 ~ 42617176 (-) True LOC118955837
XR_005039884.1 mRNA downstream 489038 42455124 ~ 42457706 (-) True LOC110520683
XM_021596918.2 mRNA downstream 582476 42339910 ~ 42364268 (-) True LOC110519982
XM_036974111.1 mRNA downstream 607090 42334907 ~ 42339654 (-) False LOC118936375
XM_036974112.1 mRNA downstream 607090 42337480 ~ 42339654 (-) True LOC118936375
XM_021596924.2 mRNA upstream 11643 43015700 ~ 43044965 (-) False LOC110519985
XM_036974133.1 mRNA upstream 11643 43015700 ~ 43044965 (-) False LOC110519985
XM_036974131.1 mRNA upstream 11643 43015700 ~ 43050410 (-) False LOC110519985
XM_036974132.1 mRNA upstream 11643 43015700 ~ 43051414 (-) False LOC110519985
XM_036974134.1 mRNA upstream 11643 43015700 ~ 43051414 (-) True LOC110519985
TU295465 other downstream 618749 42288992 ~ 42327995 (-) False G259576
TU295461 other downstream 619564 42305328 ~ 42327180 (-) False G259576
TU295450 other downstream 620966 42322739 ~ 42325778 (-) True G259576
TU295472 other downstream 627359 42290259 ~ 42319385 (-) False G259579
TU295488 other downstream 631386 42295880 ~ 42315358 (-) False col6a3
TU297567 other upstream 985467 43989524 ~ 44031505 (-) True G261580
TU299080 other upstream 2006115 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 2095283 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 2532275 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 4595161 47599218 ~ 47599815 (-) True G265988

Expression Profile