RNA id: XM_021584410.2



Basic Information


Item Value
RNA id XM_021584410.2
length 447
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC110505276
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50542986 ~ 50543432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGATACTACAATCCTCAACATGTTTCTGGCTACAGTGCTGCTCATGGGCTGTGTATGTGTGGTACCTCTCCAAGGTCAGAAGCCAGGACAGGTGGACCCCCTGACTCTGAGCAGGGCATCACAGTGCTGGACCTCCTCCTCAGAGCTCCTGCTGGAGATGCGCTCCCCGAGGATCGCTGACACCGTGCCTGCCTTCTGGGACCTGATGGTGTTCCTTAAGTCGTCAGACAACAGGAAGCACAGTGCTCTATTCTGGGACCTGGCCCAGGTCTTCTGGGACATCTATGTGGATTGTGTCCTGTCCCGGACCCATGGACTGGGGAGGCGGCAGCTAACTTGGCCCCATGAGCAGATCACTGCAACGCGCTCACTCGTCACTGACAGTAAGTACCTGTCTCTGACACTTTTCTCTCCAGTTTACAGTTTGGGCGTGGATGCTTTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306458 lncRNA downstream 11096 50531271 ~ 50531890 (-) True G269762
TU306456 lncRNA downstream 11786 50530954 ~ 50531200 (-) True G269761
TU306378 lncRNA downstream 124102 50418537 ~ 50418884 (-) True G269687
TU306350 lncRNA downstream 129816 50412651 ~ 50413170 (-) True pde11a
TU306371 lncRNA downstream 132088 50410694 ~ 50410898 (-) True G269680
TU306478 lncRNA upstream 57546 50600978 ~ 50605536 (-) True G269779
TU306518 lncRNA upstream 158814 50702246 ~ 50702996 (-) True G269817
TU306596 lncRNA upstream 235237 50778669 ~ 50778893 (-) True G269865
TU306597 lncRNA upstream 235719 50779151 ~ 50779357 (-) True G269866
TU306615 lncRNA upstream 288208 50831640 ~ 50833105 (-) True G269883
XM_021597240.2 mRNA downstream 698 50534079 ~ 50542288 (-) False LOC110520142
XM_021597242.2 mRNA downstream 698 50534079 ~ 50542288 (-) False LOC110520142
XM_021597243.2 mRNA downstream 698 50534079 ~ 50542288 (-) True LOC110520142
XM_021597241.2 mRNA downstream 875 50534079 ~ 50542111 (-) False LOC110520142
XM_021597239.2 mRNA downstream 17655 50520265 ~ 50525331 (-) True prkra
XM_021597244.2 mRNA upstream 2634 50546066 ~ 50585892 (-) False LOC110520143
XM_021597246.2 mRNA upstream 2634 50546066 ~ 50585892 (-) False LOC110520143
XM_036974508.1 mRNA upstream 2634 50546066 ~ 50585893 (-) False LOC110520143
XR_002472947.2 mRNA upstream 2634 50546066 ~ 50585893 (-) False LOC110520143
XR_002472948.2 mRNA upstream 2634 50546066 ~ 50585893 (-) False LOC110520143
TU306341 other downstream 100114 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 641448 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 671341 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 975512 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 976997 49563848 ~ 49565989 (-) False LOC110520112
TU306786 other upstream 585008 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 929892 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1053967 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1054503 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 2164751 52708183 ~ 52708816 (-) True LOC110520182

Expression Profile