RNA id: XM_021583046.2


Basic Information

Item Value
RNA id XM_021583046.2
length 2493
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110504232
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51464211 ~ 51470676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCAGACCAAGAGAACACTGAGGAGCTAGCAGCTCCTGCTGCTGAGGAGAGCACAGCCACTGTCACGGCCACTGAGGCCGAGCAGACAGACACATGGAGGATAGAGGTGGTGTCTGTGACTGATGACGACCTTCCGACGGTCGATACCCCGACCACATTGAATGTCAGTCCCCTCGACAGCCCCAATGACACCCCTCTACCCGACACTGCCAAACCTGAACCCACCACTGAGCCCAAAGCCCCGCCCCCTGCCCCACCAAGTCCAGCCATGCCAGTCACTAAGGTCCAGCCTTTCATGAATGAGGAGAAGACATGGTGTGGCCGGTTGGTGGCTCGCAGGATGGAGCTGCTGATCGGAGCATCGGTCCTCATGGTGGTTATTCTCACGCTGGGCATTGGGTTGGGAGTGGGTCTTAGCTGTGTGGGTAAGTTCCGCTGTGGTACGTCTTCTCGCTGCATCAGTGGCTCAGCGCAGTGTGACGGGGTGATGGACTGTGAGAATGGGGAGGACGAGCTTAGCTGTGTGCGTTTGAGTGGAAAGAGTTCAGTGCTCCAGGTGCTGAGTGGAGGTGTGTGGAGGACTGTCTGCTCTGAAGACTGGAACTCTGCTCTGGGCCTTTCTGCCTGCAAGCAGCTGGGCTACTCCAGGTATGTGGAGTcccgctccctccccctctctgctatAGAGCAGGACTTCCAGCATAACCTGGTGTCAATCAACCTGAGCCAGTCGGGCCAACAGGCCATCAAGATTCACAACGCCACCAGCCTCAGtaAGACTCAATGCAGCTCAGGGACGGTGACCACAATCAAATGCCTGGAGTGCGGCTCCAGACCCCAGTTCAGCAGTCGTATTGTTGGGGGTAACGTATCAGCACTGGGCCAGTTCCCCTGGCAGGTGAGCCTACACTTCCAGAGTGAACACTTGTGTGGAGGCTCTGTCGTAGCAGACAGCTGGATACTGACAGCTGCACACTGCGTGTATGGGTTTGCGTTCCCCTCACTGTGGGCAGTGCATGTAGGGTTGACAGAGCAGCCGGTGAATGGGGCTCAGGCTCTGGCAGTACAGAAGATTATTTACCATGGCCGCTACCGGCCCAAAGCTCTAGACTATGACATCGCTCTGATGAAGCTGGCTGAGCCACTCACCTTTAACGGTCTAGTGGAGCCCATCTGCCTACCTAACTTTGGGGAGGACTTTGAGGATGGGACTATGTGTTGGATTTCAGGCTGGGGGGCCACTTCAGATGGGGGTGACGCTAGTGATTCGTTGCTCTCTGCCCGGGTCCCGCTCATCTCCTCTAAGGCGTGCAGCACGCCAGGCGTCTACCAGGGCTACATCTCCCCCGGGATGATCTGTGCAGGTTACctggagggaggaacagactccTGCCAGGGAGACAGCGGGGGACCTCTGGCATGTGAGGACTCAGTGTGGAAATTGGTGGGGGCCACTAGCTGGGGCCAGGGCTGTGCTGATAGGAACAAGCCTGGGGTCTACACCCGCGTCACCCAATCCCTGAAGTGGATCCACCAACAGATGGAGAAAGAAGAGGAGCTGAACCCCTCGGAAGTTAGTACGGACAACTGAATTAGTAGAGAAGTCTTTTTATACATGCTACTTCTATCAAAAGTTTATAATATTGTACATTGCCTGGGACTTAAGAGTACTGCCAACGAACCAAATGCTGAATGTGTAGCACAGGCCAGGGTTGGATGGCCTAACAGTGACAGCAGCCCTCACAGGACAGGCAAGGGCAAACCACCCCCCAGAACAAGACACCGTAACCTTATAGACATGTTGGATGCTCAGAAAAGGCTAGAAAAGCACCTGGATCAGAGTACGgtagagtatagtacaataaACCTTTGTCAGTTTGTATCCTACATGGCTACAACCAAGCACAATGAAGGCAGTGGCACATTCAACAGTAGAGGTAAGGCATTGTTTATTCCAAAATAACAAGCTCTAAGGCAAACAGAGAAAAGTGAACAACAGTAGAAAACAAGCGACAGCGATGGTAGAGATGTGAGAGACAGAGTGTGCAGCTGAGACCCACCTGAACCCGAACCAGAAACACTCAGTGGGGATCTAAGTGCATCTCAGGTTGTCTGAATGACATCACAAGATAAGAGGGAAAATTTGATGGAAACTATACAGTACGTTGGGGCAGCTTTTCCCAACAACAAAGGCCCTGACTTGGGCAATGATATTAGAATAGAAGATGGAGAGTTCAGAAAACATTCTTAAAACTGTCCCTAGATCAGCCAGAGTACAAGTCCTCCAGTCCTTCTCAAACAGAGGACCAGCCTGTGAGGACCAGACCTGTGAGGTCTGAGGATCCCAACTGCTCTCTCCACTTTTAATACAATCATATGTATGTGTACATAAATAAAGATTAACGTGTGTAAAATATAGTTTTTAGACTGTGATCTACTTTGTACTGTTGATCTGACTGCCTAAGTACTATTTCAGTTCCTCGTGATTGTG

Function

GO: NA

KEGG:

id description
K09634 TMPRSS3; transmembrane protease serine 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307401 lncRNA downstream 8245 51455767 ~ 51455966 (-) True G270582
TU307390 lncRNA downstream 22634 51441320 ~ 51441577 (-) True G270571
TU307074 lncRNA downstream 44438 51419434 ~ 51419773 (-) True G270286
TU307053 lncRNA downstream 57399 51406595 ~ 51406812 (-) True G270267
TU307040 lncRNA downstream 65564 51398431 ~ 51398647 (-) True G270254
TU307413 lncRNA upstream 1223 51471899 ~ 51472329 (-) False fgf9
TU307436 lncRNA upstream 19918 51490594 ~ 51498737 (-) True G270611
TU307378 lncRNA upstream 58773 51529449 ~ 51532402 (-) False G270567
TU307381 lncRNA upstream 58773 51529449 ~ 51532402 (-) False G270567
TU307384 lncRNA upstream 58773 51529449 ~ 51532544 (-) True G270567
XM_021597292.2 mRNA downstream 74629 51276921 ~ 51389582 (-) True LOC110520166
XM_021597293.2 mRNA downstream 74630 51276921 ~ 51389581 (-) False LOC110520166
XM_021597286.2 mRNA downstream 328750 51130633 ~ 51135461 (-) True cldn10b
XM_021597285.2 mRNA downstream 333807 51126600 ~ 51130404 (-) False LOC110520160
XM_036974552.1 mRNA downstream 337906 51111845 ~ 51126305 (-) True dnajc3a
XM_036974557.1 mRNA upstream 1472 51472148 ~ 51478510 (-) False fgf9
XM_021597298.2 mRNA upstream 80021 51550697 ~ 51559339 (-) False LOC110520170
XM_036963750.1 mRNA upstream 126257 51596933 ~ 51619474 (-) False il1rl1
XM_036963761.1 mRNA upstream 126257 51596933 ~ 51619476 (-) False il1rl1
NM_001281424.1 mRNA upstream 135040 51605716 ~ 51619142 (-) False il1rl1
TU306786 other downstream 334901 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 1021339 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 1562673 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 1592566 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 1896737 49563848 ~ 49567474 (-) True LOC110520112
TU307414 other upstream 2648 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 126723 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 127259 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 1237507 52708183 ~ 52708816 (-) True LOC110520182
TU309646 other upstream 1779250 53249926 ~ 53251084 (-) True G272713

Expression Profile